Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(20)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(425)
  Bead Array
(2)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(1)
  HT-Seq
(0)
  Other
(8)
  All
(1,139)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16542 [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) 8,993 NCBI/NLM/NIH 2013-01-24 Affymetrix Toxoplasma gondii
Toxoplasma gondii
GeneChip in situ oligonucleotide, [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf),
2 GPL10000 [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5) 7,253 University of Pennsylvania 2010-02-02 Affymetrix Toxoplasma gondii
Toxoplasma gondii
GeneChip in situ oligonucleotide, [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5), Affymetrix custom CDF [Tgondiia520372]
3 GPL7186 [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) 9,045 Washington University School of Medicine 2008-08-20 Affymetrix Toxoplasma gondii
Toxoplasma gondii
GeneChip in situ oligonucleotide, [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4), Please see http://ancillary.toxodb.org/docs/Array-Tutorial.html for a complete description of the array design as well as for library files.
4 GPL11447 [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372minusI_IIIsnp) 9,045 Washington University School of Medicine 2011-01-13 Affymetrix Toxoplasma gondii
Toxoplasma gondii
GeneChip in situ oligonucleotide, [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372minusI_IIIsnp), The cdf used is the Tgondiia520372.cdf with all probes containing a type-I or type-III SNP removed.
5 GPL16175 [scrMalariaa] Winzeler Lab Plasmodium falciparum expression array 5312 v2 5,132 University of California San Diego 2012-10-12 Affymetrix Plasmodium falciparum
Plasmodium falciparum
GeneChip in situ oligonucleotide, [scrMalariaa] Winzeler Lab Plasmodium falciparum expression array 5312 v2,
6 GPL1321 [Plasmodium_Anopheles] Affymetrix Plasmodium/Anopheles Genome Array 22,769 Affymetrix, Inc. 2004-07-01 Affymetrix Plasmodium falciparum,Anopheles gambiae
Plasmodium falciparum,Anopheles gambiae
GeneChip in situ oligonucleotide, [Plasmodium_Anopheles] Affymetrix Plasmodium/Anopheles Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 Oct 12, 2009: annotation table updated with netaffx build 32
7 GPL14810 [Eh_Eia520620F_Ei] Affymetrix Entamoeba invadens Array 12,483 National Institute of Infectious Diseases 2011-10-28 Affymetrix Entamoeba invadens
Entamoeba invadens
GeneChip in situ oligonucleotide, [Eh_Eia520620F_Ei] Affymetrix Entamoeba invadens Array, EIN_nnnn identifiers represent TIGR locus_tag
8 GPL14609 [Eh_Eia520620F_Eh] Custom Entamoeba histolytica Eh_Eia520620F_Eh Array 9,327 National Institute of Infectious Diseases 2011-09-22 Affymetrix Entamoeba histolytica
Entamoeba histolytica
GeneChip in situ oligonucleotide, [Eh_Eia520620F_Eh] Custom Entamoeba histolytica Eh_Eia520620F_Eh Array,
9 GPL13770 [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array [CDF : Brainarray ENSEMBL Custom V12] 12,861 NCBI/NLM/NIH 2011-06-27 Affymetrix Drosophila melanogaster
Drosophila melanogaster
GeneChip in situ oligonucleotide, [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array [CDF : Brainarray ENSEMBL Custom V12], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This is identical to GPL1322 but a custom CDF environment was used to extract data [Brainarray Version 12, Drosophila2_Dm_ENSG]. CDF and other files can be downloaded at:http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/genomic_curated_CDF.asp
10 GPL1322 [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array 18,952 Affymetrix, Inc. 2004-07-01 Affymetrix Drosophila melanogaster
Drosophila melanogaster
GeneChip in situ oligonucleotide, [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32
11 GPL72 [DrosGenome1] Affymetrix Drosophila Genome Array 14,010 Affymetrix, Inc. 2002-02-19 Affymetrix Drosophila melanogaster
Drosophila melanogaster
GeneChip in situ oligonucleotide, [DrosGenome1] Affymetrix Drosophila Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 14010 entries and was indexed 29-Jan-2002 The sequences used to develop this array are accessible through FlyBase. Probes were synthesized in situ. Contains >13,500 gene sequences predicted from annotation of the Drosophila genome version 1, >8000 sequences for which confirming EST or full-length cDNA evidence is available, ~3,000 genes identified using prediction algorithms, and ~2,500 genes that not only have a gene predicted algorithmically, but also show some homology to genes from other organisms. For ~4,000 genes, expressed sequence alignment information from the Drosophila Gene Collection was used to modify the boundaries of the predicted transcript. In these cases, the probe sets correspond to the modified exon boundaries. In addition, several hundred ESTs close to predicted gene sequences, but lying outside of predetermined gene inclusion boundaries, are included. Keywords = high density oligonucleotide array
12 GPL17506 [DroGene-1_1-st] Drosophila Gene 1.1 ST Array [transcript (gene) version] 50,525 Affymetrix, Inc. 2013-07-29 Affymetrix Drosophila melanogaster
Drosophila melanogaster
GeneChip in situ oligonucleotide, [DroGene-1_1-st] Drosophila Gene 1.1 ST Array [transcript (gene) version], create_date=Fri Jul 19 10:25:18 2013 PDT chip_type=DroGene-1_1-st-v1 lib_set_name=DroGene-1_1-st lib_set_version=v1 genome-species=Drosophila melanogaster genome-version=dm3 genome-version-ucsc=dm3 genome-version-create_date=2006-03-06 genome-lifted-method=NONE genome-lifted_from-species=Drosophila melanogaster genome-lifted_from-version-ucsc=dm3 netaffx-annotation-date=2013-05-05 netaffx-annotation-netaffx-build=33 netaffx-annotation-tabular-data-version=1.1 netaffx-annotation-tabular-format-version=1.1 netaffx-annotation-data-type=transcript_cluster netaffx-annotation-docgen-method=module:affy/annotation_update/builder; exec:create-download-file.pl netaffx-annotation-docgen-version=8487 netaffx-annotation-url-transcript=www.affymetrix.com/analysis/netaffx/gene/transcript.affx?pk= netaffx-annotation-url-mrna=www.affymetrix.com/analysis/netaffx/gene/rna.affx?pk=
13 GPL18094 [DroGene-1_0-st] Drosophila Gene 1.0 ST Array [transcript (gene) version] 16,322 King's College London 2013-12-19 Affymetrix Drosophila melanogaster
Drosophila melanogaster
GeneChip in situ oligonucleotide, [DroGene-1_0-st] Drosophila Gene 1.0 ST Array [transcript (gene) version],
14 GPL6629 [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array 0 Affymetrix, Inc. 2008-03-19 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Drosophila Tiling 2.0R Array builds on the content of its predecessor and includes additional sequences that have since become available through the Berkeley Drosophila Genome Project (BDGP). The majority of the new sequences are located in the heterochromatin regions of the Drosophila genome. Based on BDGP genome release 5 25-mer oligonucleotide probes interrogate the entire genome with an average 38-base-pair spacing BPMAP and other files can be downloaded from the Affymetrix Web site below.
15 GPL7774 [DM_5chip_5] Affymetrix GeneChip Drosophila Tiling 7BP Array 5 0 Cold Spring Harbor Labs 2008-12-11 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [DM_5chip_5] Affymetrix GeneChip Drosophila Tiling 7BP Array 5, *** Note: Before submitting Affymetrix hybridization Sample data based on the Drosophila Tiling 7BP Array, please contact us at geo@ncbi.nlm.nih.gov for additional instructions. Based on BDGP genome release 5 25-mer oligonucleotide probes interrogate the entire genome with an average 7-base-pair spacing "1lq format" files submitted in lieu of platform data table. 1lq Format information: ftp://ftp1.nci.nih.gov/pub/CGAP/transcriptome/sci_21_22_paper/format_1lq.html
16 GPL7773 [DM_5chip_4] Affymetrix GeneChip Drosophila Tiling 7BP Array 4 0 Cold Spring Harbor Labs 2008-12-11 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [DM_5chip_4] Affymetrix GeneChip Drosophila Tiling 7BP Array 4, *** Note: Before submitting Affymetrix hybridization Sample data based on the Drosophila Tiling 7BP Array, please contact us at geo@ncbi.nlm.nih.gov for additional instructions. Based on BDGP genome release 5 25-mer oligonucleotide probes interrogate the entire genome with an average 7-base-pair spacing "1lq format" files submitted in lieu of platform data table. 1lq Format information: ftp://ftp1.nci.nih.gov/pub/CGAP/transcriptome/sci_21_22_paper/format_1lq.html
17 GPL7772 [DM_5chip_3] Affymetrix GeneChip Drosophila Tiling 7BP Array 3 0 Cold Spring Harbor Labs 2008-12-11 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [DM_5chip_3] Affymetrix GeneChip Drosophila Tiling 7BP Array 3, *** Note: Before submitting Affymetrix hybridization Sample data based on the Drosophila Tiling 7BP Array, please contact us at geo@ncbi.nlm.nih.gov for additional instructions. Based on BDGP genome release 5 25-mer oligonucleotide probes interrogate the entire genome with an average 7-base-pair spacing "1lq format" files submitted in lieu of platform data table. 1lq Format information: ftp://ftp1.nci.nih.gov/pub/CGAP/transcriptome/sci_21_22_paper/format_1lq.html
18 GPL7771 [DM_5chip_2] Affymetrix GeneChip Drosophila Tiling 7BP Array 2 0 Cold Spring Harbor Labs 2008-12-11 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [DM_5chip_2] Affymetrix GeneChip Drosophila Tiling 7BP Array 2, *** Note: Before submitting Affymetrix hybridization Sample data based on the Drosophila Tiling 7BP Array, please contact us at geo@ncbi.nlm.nih.gov for additional instructions. Based on BDGP genome release 5 25-mer oligonucleotide probes interrogate the entire genome with an average 7-base-pair spacing "1lq format" files submitted in lieu of platform data table. 1lq Format information: ftp://ftp1.nci.nih.gov/pub/CGAP/transcriptome/sci_21_22_paper/format_1lq.html
19 GPL7770 [DM_5chip_1] Affymetrix GeneChip Drosophila Tiling 7BP Array 1 0 Cold Spring Harbor Labs 2008-12-11 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [DM_5chip_1] Affymetrix GeneChip Drosophila Tiling 7BP Array 1, *** Note: Before submitting Affymetrix hybridization Sample data based on the Drosophila Tiling 7BP Array, please contact us at geo@ncbi.nlm.nih.gov for additional instructions. Based on BDGP genome release 5 25-mer oligonucleotide probes interrogate the entire genome with an average 7-base-pair spacing "1lq format" files submitted in lieu of platform data table. 1lq Format information: ftp://ftp1.nci.nih.gov/pub/CGAP/transcriptome/sci_21_22_paper/format_1lq.html
20 GPL5919 [Dm35b_MR] Affymetrix Drosophila Tiling 1.0R Array 0 Affymetrix, Inc. 2007-09-21 Affymetrix Drosophila melanogaster
Drosophila melanogaster
Tiling Array in situ oligonucleotide, [Dm35b_MR] Affymetrix Drosophila Tiling 1.0R Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This is the first generation of the Drosophila 1.0R Tiling Arrays. The Drosophila Tiling 1.0R Array uses 25-mer oligonucleotide probes, spaced evenly across the Drosophila genome at intervals of approximately 35 base pairs as measured from the center of a probe to the center position of the adjacent probe. Repetitive sequences were eliminated from the design using RepeatMasker software. BPMAP and other files can be downloaded from the Affymetrix Web site below.
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