Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(74)		   Primates
(0)		   Rodents
(36)		   Mammals
(9)		   Vertebrates
(11)		   Invertebrates
(39)		   Plants
(54)		   Bacteria
(33)		   Viruses
(1)		   Phages
(0)		   Unclassified
(1)		   All
(258)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(12)		   cDNA Array
(17)		   Oligo Array
(9)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(39)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL3929 Schistosoma mansoni microarray v1 4,608 USP 2006-06-27 Instituto de Quimica - Universidade de Sao Paulo (IQ-USP) Schistosoma mansoni
Schistosoma mansoni		 cDNA Array spotted DNA/cDNA, Schistosoma mansoni microarray v1,
2 GPL3821 QIMR Schistosoma 22k oligonucleotide array 20,301 Agilent Technologies 2006-05-29 Agilent Technologies Schistosoma japonicum,Schistosoma mansoni
Schistosoma japonicum,Schistosoma mansoni		 Oligo Array in situ oligonucleotide, QIMR Schistosoma 22k oligonucleotide array, This microarray contains 19,221 non-control 60-mer probes designed to sequences sourced from the Chinese sequencing team (http://schistosoma.chgc.sh.cn/) as of Dec 2004 and from the TIGR Schistosoma mansoni Gene Index (SmGI) release 5.0. Agilent's 22k control grid with eQC targets is also implemented.
3 GPL3824 Oligo array for Plasmodium berghei 5,283 Johns Hopkins School of Public Health 2006-05-30 Agilent Plasmodium berghei
Plasmodium berghei		 Oligo Array in situ oligonucleotide, Oligo array for Plasmodium berghei, This microarray is a high-resolution, high performance 60-mer oligonucleotide array that represents the Plasmodium berghei transcriptome.
4 GPL3770 SAGE:17:NlaIII:Palaemonetes pugio 13,754 2006-05-16 Palaemonetes pugio
Palaemonetes pugio		 SAGE NlaIII SAGE NlaIII, SAGE:17:NlaIII:Palaemonetes pugio, This is a virtual platform for SAGE libraries generated for Palaemonetes pugio using NlaIII as an anchor enzyme.
5 GPL3817 L vannamei microarray 2005 13,056 MarineGenomics.org 2006-05-26 Hollings Marine Laboratory, Genomics Core Litopenaeus vannamei
Litopenaeus vannamei		 cDNA Array spotted DNA/cDNA, L vannamei microarray 2005,
6 GPL3825 UI Squid EST 30K cDNA array 30,000 The University of Iowa 2006-05-30 The University of Iowa Euprymna scolopes
Euprymna scolopes		 cDNA Array spotted DNA/cDNA, UI Squid EST 30K cDNA array, Glass slide with 30,005 spots (13,978 unique cDNA clone inserts) in 48 blocks consisting of 25 columns and 25 rows. Blocks are arranged in 12 rows and 4 columns. The set of 13,978 cDNA clone inserts was identified form the University of Iowa EST collection. The clone inserts were amplified with T7 and T3 primers and printed with 50% DMSO on UltraGaps slides (Corning) using a ProSys 5510 Microarray Printer.
7 GPL3908 Matzkin-Markow_Dmojavensis_V1.0 13,056 University of Alabama in Huntsville 2006-06-22 Markow Lab Drosophila mojavensis
Drosophila mojavensis		 cDNA Array spotted DNA/cDNA, Matzkin-Markow_Dmojavensis_V1.0,
8 GPL3923 Affymetrix Drosophila Melanogaster Antisense Tiling Array 3,214,785 Affymetrix, Inc. 2006-06-26 Affymetrix Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Affymetrix Drosophila Melanogaster Antisense Tiling Array, 35bp Resolution Oligonucleotide Tiling Array Annotation in this record is based on BDGP Release 4, Apr 2004 version Keywords: synthetic, oligonucleotide, tiling array
9 GPL3809 Whole Genome, Alternative Splicing Drosophila Chip v3 22,575 University of Florida 2006-05-25 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, Whole Genome, Alternative Splicing Drosophila Chip v3,
10 GPL3884 Whole Genome, Alternative Splicing Drosophila Chip v2 22,575 University of Florida 2006-06-19 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, Whole Genome, Alternative Splicing Drosophila Chip v2,
11 GPL3880 DGRC-D. melanogaster-DGRC2-17328-v1 17,328 Drosophila Genomics Resource Center (DGRC) 2006-06-15 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, DGRC-D. melanogaster-DGRC2-17328-v1, DGRC-2 transcriptome microarrays are spotted with gene-specific Drosophila melanogaster 70 N long oligonucleotides. The oligos were designed against release 4.1 of the genome annotation using a custom implementation of OligoArray2. Oligos selected have minimal sequence similarity to other genes, size range between 65-69 nucleotides with a minimal Tm window, and locations biased towards the 3'-ends of transcripts. Oligo Synthesis was completed by Illumina. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (150 mM NaPO4, pH 8.5), exogenous (non-Drosophila) probes: 9 from Arabidopsis, 2 from soybean, 1 from apple and Ambion’s Array Control Sense Oligo Spots bacterial sequences that can be utilized with spiking RNAs, four exogenous markers - GAL4, lacZ, modified GFP, and FLPase, and a 70mer probe degradation long oligonucleotide set. DGRC-2 arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning UltraGAPS slides.
12 GPL3797 01_Drosophila_16K_Universitat_Barcelona 16,416 Universitat de Barcelona 2006-05-23 Departament de Genètica (Universitat de Barcelona) i Plataforma de Transcriptòmica (SCT-PCB-UB) Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, 01_Drosophila_16K_Universitat_Barcelona, Oligonucleotide Drosophila microarray platform containing virtually all genes from the genome. In addition to the Operon Drosophila Genome Oligo Set Version 1.1, a number of positive and negative controls have been printed so that quality of hybridizations and analysis procedures can be assessed.
13 GPL3826 DGRC-D. melanogaster-DGRC1-15552-v1 15,552 Drosophila Genomics Resource Center (DGRC) 2006-05-31 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, DGRC-D. melanogaster-DGRC1-15552-v1, DGRC-1 amplicon transcriptome microarrays are spotted with DNA fragments amplified from genomic DNA of the Oregon R strain of Drosophila melanogaster using gene-specific oligonucleotide primer pairs made by Incyte Genomics. The primers were designed against release 1 of the annotated genome sequence and were selected to amplify fragments which have minimal sequence similarity to other genes, size range between 100-600 bp, and location biased towards the 3'-end of transcripts. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (3XSSC plus 1.5M Betaine), exogenous(non-Drosophila) probes (7 from Arabidopsis and 8 Ambion array control PCR spots from bacteria that can be used with spiking RNAs), and three exogenous markers: GAL4, lacZ, and FLP. The DGRC arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning GAPS II slides.
14 GPL3827 DGRC-D. melanogaster-DGRC1-15552-v2 15,552 Drosophila Genomics Resource Center (DGRC) 2006-05-31 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, DGRC-D. melanogaster-DGRC1-15552-v2, DGRC-1 amplicon transcriptome microarrays are spotted with DNA fragments amplified from genomic DNA of the Oregon R strain of Drosophila melanogaster using gene-specific oligonucleotide primer pairs made by Incyte Genomics. The primers were designed against release 1 of the annotated genome sequence and were selected to amplify fragments which have minimal sequence similarity to other genes, size range between 100-600 bp, and location biased towards the 3'-end of transcripts. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (3XSSC plus 1.5M Betaine), exogenous(non-Drosophila) probes (7 from Arabidopsis and 8 Ambion array control PCR spots from bacteria that can be used with spiking RNAs), and three exogenous markers: GAL4, lacZ, and FLP. The DGRC arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning GAPS II slides.
15 GPL3828 DGRC-D. melanogaster-DGRC1-15552-v3 15,552 Drosophila Genomics Resource Center (DGRC) 2006-05-31 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, DGRC-D. melanogaster-DGRC1-15552-v3, DGRC-1 amplicon transcriptome microarrays are spotted with DNA fragments amplified from genomic DNA of the Oregon R strain of Drosophila melanogaster using gene-specific oligonucleotide primer pairs made by Incyte Genomics. The primers were designed against release 1 of the annotated genome sequence and were selected to amplify fragments which have minimal sequence similarity to other genes, size range between 100-600 bp, and location biased towards the 3'-end of transcripts. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (3XSSC plus 1.5M Betaine), exogenous(non-Drosophila) probes (7 from Arabidopsis and 8 Ambion array control PCR spots from bacteria that can be used with spiking RNAs), and three exogenous markers: GAL4, lacZ, and FLP. The DGRC arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning GAPS II slides.
16 GPL3829 DGRC-D. melanogaster-DGRC1-15552-v4 15,552 Drosophila Genomics Resource Center (DGRC) 2006-05-31 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, DGRC-D. melanogaster-DGRC1-15552-v4, DGRC-1 amplicon transcriptome microarrays are spotted with DNA fragments amplified from genomic DNA of the Oregon R strain of Drosophila melanogaster using gene-specific oligonucleotide primer pairs made by Incyte Genomics. The primers were designed against release 1 of the annotated genome sequence and were selected to amplify fragments which have minimal sequence similarity to other genes, size range between 100-600 bp, and location biased towards the 3'-end of transcripts. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (3XSSC plus 1.5M Betaine), exogenous(non-Drosophila) probes (7 from Arabidopsis and 8 Ambion array control PCR spots from bacteria that can be used with spiking RNAs), and three exogenous markers: GAL4, lacZ, and FLP. The DGRC arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning GAPS II slides.
17 GPL3830 DGRC-D. melanogaster-DGRC1-15552-v5 15,552 Drosophila Genomics Resource Center (DGRC) 2006-05-31 Drosophila Genomics Resource Center (DGRC) Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, DGRC-D. melanogaster-DGRC1-15552-v5, DGRC-1 amplicon transcriptome microarrays are spotted with DNA fragments amplified from genomic DNA of the Oregon R strain of Drosophila melanogaster using gene-specific oligonucleotide primer pairs made by Incyte Genomics. The primers were designed against release 1 of the annotated genome sequence and were selected to amplify fragments which have minimal sequence similarity to other genes, size range between 100-600 bp, and location biased towards the 3'-end of transcripts. The array also contains the following controls: a ubiquitously expressed gene (actin 5C), a spotting buffer-only control (3XSSC plus 1.5M Betaine), exogenous(non-Drosophila) probes (7 from Arabidopsis and 8 Ambion array control PCR spots from bacteria that can be used with spiking RNAs), and three exogenous markers: GAL4, lacZ, and FLP. The DGRC arrays are printed using an Omnigrid 300 contact-printing instrument and 48 silicon split-pins on Corning GAPS II slides.
18 GPL3833 YUSM (K. White) D. melanogaster cDNA array 13,745 University of California, San Diego, School of Medicine 2006-06-01 Dr. Kevin P. White Lab at Yale University School of Medicine Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, YUSM (K. White) D. melanogaster cDNA array, PCR fragment array for Drosophila melanogaster
19 GPL3781 UCSF Drosophila melanogaster 7.8K spotted array 7,776 UCSF 2006-05-17 UCSF, Weissman/Vale Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, UCSF Drosophila melanogaster 7.8K spotted array,
20 GPL3773 Su(Ste) tiling and microRNA array (#1) 3,968 University of Massachusetts Medical School 2006-05-16 LC Sciences (Houston, TX, USA) Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Su(Ste) tiling and microRNA array (#1),
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