Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
[ Top ] > [ 2007-04 ]
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(194)		   Primates
(1)		   Rodents
(34)		   Mammals
(7)		   Vertebrates
(4)		   Invertebrates
(12)		   Plants
(33)		   Bacteria
(44)		   Viruses
(1)		   Phages
(0)		   Unclassified
(4)		   All
(335)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(2)		   cDNA Array
(2)		   Oligo Array
(6)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(0)		   All
(12)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL5383 Combimatrix Schistosoma mansoni Tenative Consensus Expression Array v1.0 12,544 University of California, San Francisco 2007-06-12 Combimatrix Schistosoma mansoni
Schistosoma mansoni		 Oligo Array in situ oligonucleotide, Combimatrix Schistosoma mansoni Tenative Consensus Expression Array v1.0, Schistosoma mansoni Gene Index Tenative Consensus sequences (http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gimain.pl?gudb=s_mansoni) were selected for oligonucleotide uniqueness and acceptable metling temperature. Oligonucleotides were synthesized directly on Combimatrix CustomArray 12K slides using a CustomArray Synthesizer (Combimatrix, Mukiltea, WA) following manufacturer instructions.
2 GPL5381 DrexelMed-Plasmodium yoelii-7K-Version 2.0 18,432 Seattle Biomedical Research Institute 2007-06-12 Center for Molecular Parasitology, Drexel University College of Medicine Plasmodium yoelii
Plasmodium yoelii		 Oligo Array spotted oligonucleotide, DrexelMed-Plasmodium yoelii-7K-Version 2.0,
3 GPL5454 SAGE:11:NlaIII:Giardia intestinalis 35,888 2007-06-29 Giardia intestinalis
Giardia intestinalis		 SAGE NlaIII SAGE NlaIII, SAGE:11:NlaIII:Giardia intestinalis, This is a virtual platform for SAGE libraries generated for Giardia intestinalis using NlaIII as an anchor enzyme.
4 GPL5061 MIT/WI Bartel D. melanogaster 454 2007 753,797 UCSF 2007-04-03 454 Life Sciences, Brantford, CT Drosophila melanogaster
Drosophila melanogaster		 HT Sequencing other, MIT/WI Bartel D. melanogaster 454 2007,
5 GPL5404 Chromosome 4 tiling array (genome release 4) 384,249 Umea University 2007-06-21 Nimblegen Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Chromosome 4 tiling array (genome release 4),
6 GPL5151 Wakimoto Drosophila melanogaster heterochromatin tiling 312,587 University of Washington 2007-05-09 NimbleGen Systems Inc. Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Wakimoto Drosophila melanogaster heterochromatin tiling,
7 GPL5135 INDAC_CAM_FL002 17,258 University of Cambridge 2007-05-01 FlyChip Cambridge Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, INDAC_CAM_FL002, Full Moon BioSystems PowerMatrix. 3-D matrix polymer coated porous glass surface.
8 GPL5112 MLRG/DrosoIndac Drosophila melanogaster 15K 15,744 MGX - Montpellier GenomiX 2007-04-20 Montpellier Génopole Microarray core facility Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, MLRG/DrosoIndac Drosophila melanogaster 15K, The Drosophila melanogaster INDAC Oligo-chip contain 14,444 70mer probes representing 13,900 genes and 19,239 transcripts (see the International Drosophila Array Consortium website for details), All probes are designed from gene transcript sequences from the Flybase release 4.2 database (see the Flybase website for details). The library also included sets of positive and negative controls that were used for quality control purposes. Arrays were printed using the Amersham Biosciences Lucidea Array spotter on aminosilane-coated mirror glass slides (Exprexionsâ„¢ slideGenExprex).
9 GPL5382 BCM/Shaulsky Dictyostelium accent 16K v1.0 16,896 Baylor college of medicine 2007-06-12 Shaulsky lab Dictyostelium discoideum
Dictyostelium discoideum		 cDNA Array spotted DNA/cDNA, BCM/Shaulsky Dictyostelium accent 16K v1.0, • General array design: Glass slides were coated with 3-Glycidoxypropyltrimethoxysilane (Aldrich). Target DNA was printed on the activated glass slides on 200 µm centers with a GeneMachines OmniGrid Accent robot with Chipmaker II pins (Tele-chem Intl.). The full ‘Accent” array has 22x24 targets (total 8,488 targets) targets as described in supplemental table 5 (see supplemental file ‘6_arrayMap2(table5).xls’).
10 GPL5129 Daphnia magna cDNA microarray ver. 2 7,680 UMass Boston 2007-04-26 printed at UC Berkeley Daphnia magna
Daphnia magna		 cDNA Array spotted DNA/cDNA, Daphnia magna cDNA microarray ver. 2,
11 GPL5367 GSC C.elegans 22.5K jan04 22,370 Buck Institute for Age Research 2007-06-07 Genome Sequencing Center, University of Washington School of Medicine Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array spotted oligonucleotide, GSC C.elegans 22.5K jan04,
12 GPL5390 Ancylostoma caninum microarray - public and SSH ESTs 10,743 the Queensland Institute of Medical Research 2007-06-14 Agilent Ancylostoma caninum
Ancylostoma caninum		 Oligo Array spotted oligonucleotide, Ancylostoma caninum microarray - public and SSH ESTs, 2x11k arrays in 2x105k backings
DBCLS | Site Policies | Contact Us