Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(102)		   Primates
(1)		   Rodents
(48)		   Mammals
(5)		   Vertebrates
(8)		   Invertebrates
(16)		   Plants
(65)		   Bacteria
(39)		   Viruses
(0)		   Phages
(0)		   Unclassified
(5)		   All
(289)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(1)		   cDNA Array
(3)		   Oligo Array
(5)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(5)		   Other
(0)		   All
(16)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6274 SAGE:17:NlaIII:Rhipicephalus microplus 8,450 2007-12-13 Rhipicephalus microplus
Rhipicephalus microplus		 SAGE NlaIII SAGE NlaIII, SAGE:17:NlaIII:Rhipicephalus microplus, This is a virtual platform for SAGE libraries generated for Rhipicephalus microplus using NlaIII as an anchor enzyme.
2 GPL6269 Plasmodium falciparum Rathod Lab 8832 8,832 University of Washington 2007-12-12 Rathod Lab, University of Washington, USA Plasmodium falciparum
Plasmodium falciparum		 Oligo Array spotted oligonucleotide, Plasmodium falciparum Rathod Lab 8832,
3 GPL6187 Plasmodium falciparum Rathod Lab 8096 8,096 University of Washington 2007-11-28 Rathod Lab, University of Washington, USA Plasmodium falciparum
Plasmodium falciparum		 Oligo Array spotted oligonucleotide, Plasmodium falciparum Rathod Lab 8096,
4 GPL6240 JCVI PFGRC Giardia lamblia 20K v2 array designed primarily based on strain WB_C6 9,615 J. Craig Venter Institute 2007-12-04 JCVI PFGRC Giardia intestinalis
Giardia intestinalis		 Oligo Array spotted oligonucleotide, JCVI PFGRC Giardia lamblia 20K v2 array designed primarily based on strain WB_C6, This set includes 7003 oligonucleotides, has 20160 spots distributed in 48 blocks.
5 GPL6197 D. simulans Male Head 454 2007 26,336 University of Chicago 2007-12-01 454 Life Sciences, Brantford, CT Drosophila simulans
Drosophila simulans		 HT Sequencing other, D. simulans Male Head 454 2007,
6 GPL6198 D. pseudoobscura Male Head 454 2007 18,978 University of Chicago 2007-12-01 454 Life Sciences, Brantford, CT Drosophila pseudoobscura
Drosophila pseudoobscura		 HT Sequencing other, D. pseudoobscura Male Head 454 2007,
7 GPL6128 Drosophila melanogaster Aubergine ChIP 854,083 University of Massachusetts Medical School 2007-11-14 Drosophila melanogaster
Drosophila melanogaster		 MIXTURE other, Drosophila melanogaster Aubergine ChIP, Chromatin immunoprecipitation was performed with an antibody against histone H3 methylated on K9, from fly ovaries from heterozygous (aubQC/CyO) or trans-heterozygous (aubQC/HN2) aubergine mutants. Immunoprecipitated DNA was fragmented and polished, then analyzed by deep-sequencing on a Solexa apparatus, according to the manufacturer's protocol.
8 GPL6072 Drosophila melanogaster small RNA sequence by Solexa 347,863 Sloan-Kettering Institute 2007-10-31 Drosophila melanogaster
Drosophila melanogaster		 HT Sequencing other, Drosophila melanogaster small RNA sequence by Solexa,
9 GPL6024 UMMS Drosophila melanogaster 454 sequenced small RNAs 59,906 University of Massachusetts Medical School 2007-10-21 454 Drosophila melanogaster
Drosophila melanogaster		 HT Sequencing other, UMMS Drosophila melanogaster 454 sequenced small RNAs, The "expected miRNA* extremities" are the extremities described in miRBase ( http://microrna.sanger.ac.uk/sequences/ ) for the few miRNA*s which have been experimentally validated; for the others, the miRNA sequence (as annotated in miRBAse) was used to infer the sequence of the corresponding miRNA* (this is called "conceptual dicing"). All these annotations were based on the latest release of miRBase (release 10.0, August 2007).
10 GPL6056 HartlLab Drosophilamelanogaster PCRproducts 22k 21,487 Harvard University 2007-10-28 Hartl Lab Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, HartlLab Drosophilamelanogaster PCRproducts 22k,
11 GPL5983 INDAC Drosophila melanogaster 15K v5.0 16,320 University of Southern California 2007-10-10 Illumina (San Diego, CA) Drosophila melanogaster
Drosophila melanogaster		 Oligo Array spotted oligonucleotide, INDAC Drosophila melanogaster 15K v5.0,
12 GPL6048 Drosophila Chromosome 2L microarray (based on Dmel release 3.0) 12,418 Friedrich Miescher Institute 2007-10-23 laboratory of Stephen P. Bell at MIT Drosophila melanogaster
Drosophila melanogaster		 cDNA Array spotted DNA/cDNA, Drosophila Chromosome 2L microarray (based on Dmel release 3.0), The genomic array used in this study, dros_chrom_array_MIT_120803, was designed in the laboratory of Stephen P. Bell at the Massachusetts Institute of Technology. The array contains 13440 features spotted on glass Gaps II slides (Corning) in 32 meta grids. There are 11816 1.5 kb pcr products that tile the non-repetitive sequences of chromosome 2L. In addition there are 287 1.5 kb features from chromosome 4, 90 features from chromosome 3L, 177 features from chromosome 3R and finally 48 features corresponding to telomeric sequences. The features were all amplified from BACs and visually verified. The oligos for amplification were designed from the final release candidate for release 3.0 of the Drosophila genome using custom perl scripts and primer3. The primers were synthesized by Operon. The file, dros_chrom_array_MIT_120803.csv, describes and provides coordinates for all the features on the array.
13 GPL6196 D. melanogaster Male Head 454 2007 8,527 University of Chicago 2007-12-01 454 Life Sciences, Brantford, CT Drosophila melanogaster
Drosophila melanogaster		 HT Sequencing other, D. melanogaster Male Head 454 2007,
14 GPL6016 Affymetrix Drosophila Genome Tiling Array 1.0F (Dm35b_MF_v02) 0 Saint Louis University School of Medicine 2007-10-17 Affymetrix Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Affymetrix Drosophila Genome Tiling Array 1.0F (Dm35b_MF_v02), 35bp Resolution Oligonucleotide Tiling Array. Annotation in this record is based on the April 2004 release of the Drosophila melangaster genome sequence (Berkeley Drosophila Genome Project). Probe mappings and array coordinates (7G scanner) are available in the supplementary .tpmap file linked to this submission.
15 GPL6195 IU/UNH/DU Daphnia pulex Generation 2.4 (3.1K) 3,672 Indiana University 2007-11-30 Indiana University - The Center for Genomics and Bioinformatics Daphnia pulex
Daphnia pulex		 cDNA Array spotted DNA/cDNA, IU/UNH/DU Daphnia pulex Generation 2.4 (3.1K), This is a condensed platfom of the full array which was printed with duplicate spots side-by-side, and consisted of 24 blocks of 18 rows and 17 columns each.
16 GPL6047 Nimblegen Caenorhabditis elegans 385K array_WS120 391,015 University of British Columbia 2007-10-23 NimbleGen Systems Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, Nimblegen Caenorhabditis elegans 385K array_WS120,
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