Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Invertebrates
(1,004)

Plants
(2,170)

Bacteria
(1,636)

SAGE RsaI
(0)

SAGE Sau3A
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(1)

HT-Seq
(240)

Other
(6)

All
(1,004)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL14623	Agilent-029288 Hydra vulgaris 45J haep_celerav02_1.0	45,220	zoological institute Kiel	2011-09-26	Agilent Technologies	Hydra vulgaris	Oligo Array	in situ oligonucleotide, Agilent-029288 Hydra vulgaris 45J haep_celerav02_1.0, Hydra vulgaris (AEP) Arrays of this design have barcodes that begin with 16029288 or 2529288. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
2	GPL16046	C. elegans 12 x 135K Gene Expression Array	15,405	Yunnan University	2012-09-12	NimbleGen	Caenorhabditis elegans	Oligo Array	in situ oligonucleotide, C. elegans 12 x 135K Gene Expression Array, NimbleGen 12x135K microarrays for gene expression analysis enable you to conveniently and simultaneously hybridize 12 samples on each slide.
3	GPL6678	Yonsei University Drosophila-6k-twin-microarray version 1	6,112	Yonsei University	2008-04-03	Digital Genomics (Seoul, Korea).	Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Yonsei University Drosophila-6k-twin-microarray version 1,
4	GPL5922	PIWI-associated piRNA in Drosophila melanogaster ovary	13,299	Yale University Stem Cell Center	2007-09-23		Drosophila melanogaster	Other	other, PIWI-associated piRNA in Drosophila melanogaster ovary,
5	GPL446	C_elegans_GHIstanfordprint_YMD2.gal.txt	21,632	Yale University School of Medicine	2003-08-26		Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, C_elegans_GHIstanfordprint_YMD2.gal.txt, Gene list for C. elegans arrays produced at Stanford and used by Reinke lab at Yale
6	GPL248	Dmel_arrayplatform	20,000	Yale University School of Medicine	2003-02-18		Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Dmel_arrayplatform, Spotted array using PCR fragments of approximately 95% of the genes in the D. melanogaster BDGP genome. We followed a sequence of decreasingly stringent tests to pick optimal primer pairs for the PCR fragments on the arrays. For each gene, we looked for (first) a 500b to 2kb sequence at the 3Ã¢â‚¬â„¢ end and, failing this, (second) two 200b to 500b sequences in:(1) coding sequence, completely within an EST clot, and unduplicated (BLAST<=10^-4); (2) coding sequence, partially within an EST clot, unduplicated; (3) coding sequence, unduplicated; (4) exon, completely within an EST clot, unduplicated; (5) exon, partially within an EST clot, unduplicated; (6) exon, unduplicated; (7) sequence less than 2kb at the 3Ã¢â‚¬â„¢ end. See above for the other details about making these arrays.
7	GPL539	C_elegans_Aprint_YMD	20,000	Yale University School of Medicine	2003-10-09		Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, C_elegans_Aprint_YMD, A print at Yale University, made 7/01
8	GPL540	elegans_Bprint_YMD.gal.txt	20,000	Yale University School of Medicine	2003-10-09		Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, elegans_Bprint_YMD.gal.txt, B print done at Yale University
9	GPL3859	elegans_Dprint_YMD	19,660	Yale University School of Medicine	2006-06-08	Gene Pix	Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, elegans_Dprint_YMD, fourth print of sjj primer set 1st PCR
10	GPL3860	elegans_Fprint_YMD	19,213	Yale University School of Medicine	2006-06-08	Gene Pix	Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, elegans_Fprint_YMD, 6th print of sjj primer 1st PCR
11	GPL3861	elegans_Cprint_YMD	19,213	Yale University School of Medicine	2006-06-09	Gene Pix	Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, elegans_Cprint_YMD, the third print run at Yale using the 1st PCR of the sjj primer set
12	GPL13335	Aedes aegypti whole genome array	15,959	Yale University School of Medicine	2011-03-28	NimbleGen	Aedes aegypti	Oligo Array	in situ oligonucleotide, Aedes aegypti whole genome array, ORF array of the aedes aegypti genome native array description file: aaegypti_60mer_probes_rank4.filter native array description file: OID14431.ngd
13	GPL218	Drosophila_Life_Cycle	12,588	Yale University School of Medicine	2002-11-19		Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Drosophila_Life_Cycle, cDNA microarrays were constructed with ~9,700 Drosophila cDNA elements representing 5,081 different genes. The 5' ends were sequenced of 80% of the cDNAs to verify their identities. For more details on Materials and Methods, see http://www.sciencemag.org/cgi/data/297/5590/2270/DC1/1
14	GPL3955	Anopheles gambiae high density oligonucleotide microarray	195,213	Yale University	2006-06-29	NASA Ames Center	Anopheles gambiae	Oligo Array	in situ oligonucleotide, Anopheles gambiae high density oligonucleotide microarray,
15	GPL4455	Yale Drosophila melanogaster 14K Whole Genome Embryogenesis Timecourse	14,168	Yale University	2006-10-16	Kevin White	Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Yale Drosophila melanogaster 14K Whole Genome Embryogenesis Timecourse,
16	GPL3982	Yale Caenorhabditis elegans 19K elegans_Dprint_YMD	19,660	Yale Med	2006-07-07	Gene Pix	Caenorhabditis elegans	cDNA Array	spotted DNA/cDNA, Yale Caenorhabditis elegans 19K elegans_Dprint_YMD, fourth print of sjj primer set 1st PCR
17	GPL6910	Drosophila melanogaster 19K 2001Nov18DrosoprintRelease020821	19,152	Yale	2008-05-28	Gene Pix	Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Drosophila melanogaster 19K 2001Nov18DrosoprintRelease020821,
18	GPL6911	Drosophila melanogaster 19K 2002Jul23DrosoprintwithPatchedRelease020821	19,152	Yale	2008-05-28	Gene Pix	Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Drosophila melanogaster 19K 2002Jul23DrosoprintwithPatchedRelease020821,
19	GPL6912	Drosophila melanogaster 19K 2002Sept24DrosoprintwithPatchedRelease021101	19,152	Yale	2008-05-28	Gene Pix	Drosophila melanogaster	cDNA Array	spotted DNA/cDNA, Drosophila melanogaster 19K 2002Sept24DrosoprintwithPatchedRelease021101,
20	GPL14150	Agilent-021750 Schmidtea mediterranea 45K Smed_WI_expression_chip_Reddien_v2 015536 (Feature Number version)	45,220	Whitehead Institutue	2011-08-15	Agilent Technologies	Schmidtea mediterranea	Oligo Array	in situ oligonucleotide, Agilent-021750 Schmidtea mediterranea 45K Smed_WI_expression_chip_Reddien_v2 015536 (Feature Number version), Arrays of this design have barcodes that begin with 16021750 or 2521750. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

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