Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(165)
  Primates
(0)
  Rodents
(23)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(3)
  Plants
(14)
  Bacteria
(3)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(222)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(2)
  Oligo Array
(1)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(3)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1483 WUSTL Brugia malayi v.1 7,056 Washington Univeristy School of Medicine 2004-10-06 Brugia malayi
Brugia malayi
Oligo Array spotted oligonucleotide, WUSTL Brugia malayi v.1, B. malayi clusters for arrays were selected from 8392 clusters generated and posted at the website http://nema.cap.ed.ac.uk/nematodeESTs/nembase These clusters were derived from > 20 cDNA libraries that represent the major B. malayi life cycle stages. They represent approximately ~40% of the total number of predicted genes for B. malayi. Clusters with multiple ESTs, predicted homology by BLAST, and sequence permitting design of a unique 65-mer oligonucleotides were chosen for inclusion on the array. Oligos were synthesized from the consensus sequence of selected clusters (n=3569) by standard methods by Illumina (San Diego, CA). The oligonucleotides (50nM in 3x SSC with 0.75M betaine) were printed in duplicate on MWG Epoxy slides (MWG Biotech Inc, High point, NC) by a locally constructed linear servo arrayer (after the DeRisi model, http://derisilabs.ucsf.edu/ ). Keywords = brugia malayi nematode worm parasite filaria filariasis
2 GPL1484 cDNA microarray Trymanosoma cruzi - v.2 3,840 Universidade de São Paulo 2004-10-07 Trypanosoma cruzi
Trypanosoma cruzi
cDNA Array spotted DNA/cDNA, cDNA microarray Trymanosoma cruzi - v.2, DNA microarrays were constructed with 755 ESTs obtained from non-normalised and normalised cDNA libraries of CL Brener epimastigotes and from amastigotas of Tulahuen (Ãœrmenyi et al., 1999; DaRocha et al., 2000). Polymerase chain reaction (PCR) amplification of the ESTs (average length 800 bp) was obtained with T3 and T7 primers using DNA polymerase (Biolase). The amplification products were purified with Multiscreen plates (Millipore). Inserts representing 32 cloned T. cruzi coding and non-coding genes, control sheared DNAs and oligonucleotides were also immobilised on the glass slides with Generation III Microarray System spotter (Molecular Dynamics) according to manufacturer's instructions.
3 GPL1748 dmyc overexpression 6,637 Fred Hutchinson Cancer Research Center 2004-12-14 Drosophila melanogaster
Drosophila melanogaster
cDNA Array spotted DNA/cDNA, dmyc overexpression, cDNA spotted microarrays were constructed from release 1 of the Drosophila Gene Collection (Rubin et al. 2000 ) and 430 additional cDNA and genomic sequences. ). Microarray analyses were performed on samples ar 7 or 14h after dMyc induction. Total RNA was isolated from wondering third instar larvae (120 h after egg deposition, AED) which were heat shocked at 37°C for 2 h.