Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(56)
  Primates
(0)
  Rodents
(26)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(69)
  Bacteria
(42)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(279)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(1)
  Oligo Array
(23)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(7)
  Other
(0)
  All
(0)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15193 UIUC/Newmark-Smed2 CombiMatrix array 11,584 U of IL / HHMI 2012-02-06 CombiMatrix Schmidtea mediterranea
Schmidtea mediterranea
Oligo Array spotted oligonucleotide, UIUC/Newmark-Smed2 CombiMatrix array,
2 GPL15192 UIUC/Newmark-Smed1 CombiMatrix array 11,835 U of IL / HHMI 2012-02-06 CombiMatrix Schmidtea mediterranea
Schmidtea mediterranea
Oligo Array spotted oligonucleotide, UIUC/Newmark-Smed1 CombiMatrix array,
3 GPL15157 Stillman Lab Porcelain Crab Array 3 24,748 San Francisco State University 2012-01-24 UCSF Center for Advanced Technology Petrolisthes cinctipes
Petrolisthes cinctipes
cDNA Array spotted DNA/cDNA, Stillman Lab Porcelain Crab Array 3,
4 GPL15221 Plasmodium falciparum Rathod09A_10816 10,816 University of Washington 2012-02-12 Rathod Lab, University of Washington, USA Plasmodium falciparum
Plasmodium falciparum
Oligo Array spotted oligonucleotide, Plasmodium falciparum Rathod09A_10816,
5 GPL15246 NimbleGen P. falciparum 3D7 Whole Genome CGH Array [090317_Plasmodium_3D7_WG_CGH] 385,585 NimbleGen Systems, Inc. 2012-02-16 NimbleGen Plasmodium falciparum
Plasmodium falciparum
Oligo Array in situ oligonucleotide, NimbleGen P. falciparum 3D7 Whole Genome CGH Array [090317_Plasmodium_3D7_WG_CGH], DESIGN_NAME: 090317_Plasmodium_3D7_WG_CGH DESIGN_ID: 9384
6 GPL15364 NimbleGen Honeybee 2.1M array 1,985,432 JHU 2012-03-20 NimbleGen Apis mellifera
Apis mellifera
Oligo Array in situ oligonucleotide, NimbleGen Honeybee 2.1M array, Annotation based on Baylor College of Medicine Human Genome Sequencing Center honeybee genome assembly Oct 2006 (Amel_4.0)
7 GPL15387 NimbleGen Drosophila melanogaster gene expression 12X135K array 16,659 Emory University 2012-03-29 NimbleGen Drosophila melanogaster
Drosophila melanogaster
Oligo Array in situ oligonucleotide, NimbleGen Drosophila melanogaster gene expression 12X135K array, NimbleGen design catalog # 05543762001. The Platform data table is a gene-level representation of the expression array's features. The .ndf and .ngd files are linked below as supplementary files. Native array description file: 100718_Dmel_exp.ndf Native array description file: 100718_Dmel_exp.ngd
8 GPL15352 NimbleGen Drosophila melanogaster 12X135K Gene Expression Array [100718_Dmel_exp, DesignID:535513] 21,051 Emory University 2012-03-14 NimbleGen Drosophila melanogaster
Drosophila melanogaster
Oligo Array in situ oligonucleotide, NimbleGen Drosophila melanogaster 12X135K Gene Expression Array [100718_Dmel_exp, DesignID:535513], Drosophila melanogaster DM5.7 build and having 60 basepair probes with target genes 16637 with 8 probes per gene ( one pair for replicates ) per each array DesignID: 535513 native array description file:100718_Dmel_exp.ngd native array description file:100718_Dmel_exp.ndf
9 GPL15209 Illumina HiSeq 2000 (Taenia multiceps) 0 2012-02-09 Taenia multiceps
Taenia multiceps
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Taenia multiceps),
10 GPL15118 Illumina HiSeq 2000 (Sterkiella histriomuscorum) 0 2012-01-11 Sterkiella histriomuscorum
Sterkiella histriomuscorum
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Sterkiella histriomuscorum),
11 GPL15208 Illumina HiSeq 2000 (Dirofilaria immitis) 0 2012-02-09 Dirofilaria immitis
Dirofilaria immitis
HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Dirofilaria immitis),
12 GPL15334 Illumina HiSeq 1000 (Drosophila melanogaster) 0 2012-03-08 Drosophila melanogaster
Drosophila melanogaster
HT Sequencing high-throughput sequencing, Illumina HiSeq 1000 (Drosophila melanogaster),
13 GPL15247 Illumina Genome Analyzer IIx (Strongylocentrotus purpuratus) 0 2012-02-16 Strongylocentrotus purpuratus
Strongylocentrotus purpuratus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Strongylocentrotus purpuratus),
14 GPL15222 Illumina Genome Analyzer II (Culex quinquefasciatus) 0 2012-02-13 Culex quinquefasciatus
Culex quinquefasciatus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Culex quinquefasciatus),
15 GPL15348 Illumina Genome Analyzer (Giardia intestinalis) 0 2012-03-14 Giardia intestinalis
Giardia intestinalis
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Giardia intestinalis),
16 GPL15202 Exiqon Caenorhabditis elegans miRNA array [miRCURY LNA Array V.11, miRBase 14.0] 149 UMDNJ 2012-02-08 Exiqon Caenorhabditis elegans
Caenorhabditis elegans
Oligo Array spotted oligonucleotide, Exiqon Caenorhabditis elegans miRNA array [miRCURY LNA Array V.11, miRBase 14.0], miRCURY LNA Array Other species Version 11 annotated to miRBase 14.0
17 GPL15181 Caenorhabditis elegans custom miRNA array 96 University of Cambridge 2012-02-02 Simard Laboratory Caenorhabditis elegans
Caenorhabditis elegans
Oligo Array spotted oligonucleotide, Caenorhabditis elegans custom miRNA array, CodeLink® Activated Microarray Slides with a TRIDIA™ NHS Coating. Product Code DN01-0025 – formerly GE Healthcare #300011 (or #256700-00)
18 GPL15131 Agilent_038059 Plasmodium berghei_Mar2011_transcriptome 15,744 Princeton University 2012-01-15 Agilent Technologies Plasmodium berghei
Plasmodium berghei
Oligo Array in situ oligonucleotide, Agilent_038059 Plasmodium berghei_Mar2011_transcriptome, Arrays of this design have barcodes that begin with 16038059 or 2538059. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. The PlasmoDB_IDs are accession numbers for both GeneDB.org and the main community resource PlasmoDB.org
19 GPL15130 Agilent-037237 P.falciparum_Pf3D7v7.1_Transcriptome_apimito 15,744 Princeton University 2012-01-15 Agilent Technologies Plasmodium falciparum
Plasmodium falciparum
Oligo Array in situ oligonucleotide, Agilent-037237 P.falciparum_Pf3D7v7.1_Transcriptome_apimito, DesignID: 037237 Arrays of this design have barcodes that begin with 16037237 or 2537237. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
20 GPL15191 Agilent-034793 Custom Bombyx mori 4x44k designed by Genotypic Technology Pvt. Ltd. (AMADID: 034793) 24,924 Genotypic Technology 2012-02-06 Agilent Technologies Bombyx mori
Bombyx mori
Oligo Array in situ oligonucleotide, Agilent-034793 Custom Bombyx mori 4x44k designed by Genotypic Technology Pvt. Ltd. (AMADID: 034793),