Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(66)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(6,935)		   Tiling Array
(4,286)		   cDNA Array
(7,649)		   Oligo Array
(13,277)		   Bead Array
(406)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(6)		   HT-Seq
(4,700)		   Other
(9)		   All
(37,338)		  
  brain
(2,332)		   blood
(584)		   connective
(437)		   reproductive
(1,361)		   muscular
(258)		   digestive
(816)		   liver
(471)		   lung
(552)		   urinary
(65)		   endo/exo-crine
(590)		   embryo
(3,085)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(2,242)		   unclassified
(24,545)		   all
(37,338)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM336052 embryo hermaphrodites 9,306,695 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 embryo Embryo_hermaphrodites
2 GSM506207 Kc PSC 3 6,247,570 FMI 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Kc genomic DNA title:Kc PSC 3 description:Chromatin was prepared from Kc cells and ChIP using an antibody against Drosophila PSC was performed.
3 GSM427332 Illumina sequencing of small RNAs from post-gastrulation C. elegans embryos 6,175,141 Max-Delbrueck Centrum Berlin-Buch 2009-07-14 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans		 embryo Post-gastrulation embryo
4 GSM506206 Kc PSC 2 6,056,463 FMI 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Kc genomic DNA title:Kc PSC 2 description:Chromatin was prepared from Kc cells and ChIP using an antibody against Drosophila PSC was performed.
5 GSM628271 r2d2[1] ovary total RNA 5,929,819 Memorial Sloan Kettering Cancer Center 2010-11-23 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 ovary r2d2[1] ovary total RNA
6 GSM628272 ago2[414] ovary total RNA 5,506,450 Memorial Sloan Kettering Cancer Center 2010-11-23 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 ovary ago2[414] ovary total RNA
7 GSM385821 Drosophila OSS cell small RNA libraries, rep3 5,373,262 Memorial Sloan Kettering Cancer Center 2009-03-24 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Drosophila OSS cells title:Drosophila OSS cell small RNA libraries, rep3 description:Small RNA data (technical replicate).
8 GSM639446 tribolium_adults 5,151,841 University of Manchester 2010-12-13 [HT Sequencing] AB SOLiD System (Tribolium castaneum) (GPL11311) SRA Tribolium castaneum
Tribolium castaneum		 unclassified source_name:Tribolium castaneum adult individuals title:tribolium_adults description:Total endogenous small RNAs from Tribolium castaneum adults.
9 GSM336086 young adult males 5,084,112 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:young adult_males title:young adult males description:RNA enriched for small RNA species (<200nt)
10 GSM847430 wild type, 68 h, untreated 4,481,545 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina HiSeq 2000 (Caenorhabditis elegans) (GPL13657) SRA Caenorhabditis elegans
Caenorhabditis elegans		 pooled Whole worms, adult, untreated
11 GSM336055 mid-L1 hermaphrodites 4,265,902 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:mid-L1_hermaphrodites title:mid-L1 hermaphrodites description:RNA enriched for small RNA species (<200nt)
12 GSM385748 Drosophila OSS cell small RNA libraries, rep2 4,258,000 Memorial Sloan Kettering Cancer Center 2009-03-24 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Drosophila OSS cells title:Drosophila OSS cell small RNA libraries, rep2 description:Small RNA data (technical replicate).
13 GSM442434 Kc RNA 4,228,348 FMI 2009-08-19 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Kc RNA title:Kc RNA description:contains filtered reads
14 GSM847423 control transgene 4,202,346 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans		 pooled Whole worms, control transgene
15 GSM847429 wild type, 52 h, untreated 4,080,668 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina HiSeq 2000 (Caenorhabditis elegans) (GPL13657) SRA Caenorhabditis elegans
Caenorhabditis elegans		 pooled Whole worms, larvae, untreated
16 GSM336058 mid-L3 hermaphrodites 3,987,491 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:mid-L3_hermaphrodites title:mid-L3 hermaphrodites description:RNA enriched for small RNA species (<200nt)
17 GSM506205 Kc PSC 1 3,959,654 FMI 2010-02-03 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Kc genomic DNA title:Kc PSC 1 description:Chromatin was prepared from Kc cells and ChIP using an antibody against Drosophila PSC was performed.
18 GSM336056 mid-L2 hermaphrodites 3,870,829 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:mid-L2_hermaphrodites title:mid-L2 hermaphrodites description:RNA enriched for small RNA species (<200nt)
19 GSM371638 small RNA from S2 cells (S2-NP) 3,814,663 Memorial Sloan Kettering Cancer Center 2009-02-16 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Drosophila melanogaster S2 cells title:small RNA from S2 cells (S2-NP) description:Small RNA data.
20 GSM443998 cde1input 3,669,796 Hubrecht Institute 2009-08-24 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans		 unclassified source_name:cde1input title:cde1input description:Small RNA sequence data
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