Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(2)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(151)		   Tiling Array
(50)		   cDNA Array
(0)		   Oligo Array
(311)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(3)		   Other
(0)		   All
(517)		  
  brain
(36)		   blood
(3)		   connective
(0)		   reproductive
(73)		   muscular
(6)		   digestive
(48)		   liver
(17)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(17)		   embryo
(19)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(12)		   unclassified
(286)		   all
(517)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM183500 ChIP-Chip with anti-Flag antibody, replicate 1 of 2. 3,214,785 RIKEN 2007-04-22 [Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-Flag antibody, replicate 1 of 2. description:Data from the chromatin immunoprecipitation with anti-Flag antibody on Drosophila genome tiling array. Replicate no.1 of 2 (Independent sampling).
2 GSM183501 ChIP-Chip with anti-Flag antibody, replicate 2 of 2. 3,214,785 RIKEN 2007-04-22 [Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-Flag antibody, replicate 2 of 2. description:Data from the chromatin immunoprecipitation with anti-Flag antibody on Drosophila genome tiling array. Replicate no. 2 of 2 (Independent sampling).
3 GSM183502 ChIP-Chip with anti-V5 antibody, replicate 1 of 2. 3,214,785 RIKEN 2007-04-22 [Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-V5 antibody, replicate 1 of 2. description:Data from the chromatin immunoprecipitation with anti-V5 antibody on Drosophila genome tiling array. Replicate no.1 of 2 (Independent sampling).
4 GSM183503 ChIP-Chip with anti-V5 antibody, replicate 2 of 2. 3,214,785 RIKEN 2007-04-22 [Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923) genomic Drosophila melanogaster
Drosophila melanogaster		 unclassified source_name:Cultured Drosophila S2 cells title:ChIP-Chip with anti-V5 antibody, replicate 2 of 2. description:Data from the chromatin immunoprecipitation with anti-V5 antibody on Drosophila genome tiling array. Replicate no.2 of 2 (Independent sampling).
5 GSM441215 FoxA-a ChIP-chip on Ciona intestinalis embryo (64-cell stage) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged FoxA-a ChIP in Ciona intestinalis embryo (64-cell stage)
6 GSM441224 FoxD-a/b ChIP-chip on Ciona intestinalis embryo (32-cell stage) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged FoxD-a/b ChIP in Ciona intestinalis embryo (32-cell stage)
7 GSM441227 FoxD-a/b ChIP-chip on Ciona intestinalis embryo (64-cell stage) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged FoxD-a/b ChIP in Ciona intestinalis embryo (64-cell stage)
8 GSM441230 Neurogenin ChIP-chip on Ciona intestinalis embryo (64-cell stage) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 cerebrum Whole Cell Extract (WCE) DNA GFP-tagged Neurogenin ChIP in Ciona intestinalis embryo (64-cell stage)
9 GSM441233 Otx ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Otx ChIP in Ciona intestinalis embryo (early gastrula)
10 GSM441236 Snail ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Snail ChIP in Ciona intestinalis embryo (early gastrula)
11 GSM441239 SoxC ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged SoxC ChIP in Ciona intestinalis embryo (early gastrula)
12 GSM441274 Tbx6b ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2 968,645 Kyoto University 2009-08-17 [Tiling Array] Kyoto University Custom Agilent Ciona intestinalis 1M Tiling Array (GPL8993) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Tbx6b ChIP in Ciona intestinalis embryo (early gastrula)
13 GSM271902 ZicL ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 1, Array 1 241,700 Kyoto University 2008-03-10 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.1 (of 2) (GPL6555) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged ZicL ChIP in Ciona intestinalis embryo (early Gastrula)
14 GSM271903 ZicL ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 1, Array 2 241,700 Kyoto University 2008-03-10 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.2 (of 2) (GPL6556) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged ZicL ChIP in Ciona intestinalis embryo (early Gastrula)
15 GSM271904 ZicL ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2, Array 1 241,700 Kyoto University 2008-03-10 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.1 (of 2) (GPL6555) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged ZicL ChIP in Ciona intestinalis embryo (early Gastrula)
16 GSM271905 ZicL ChIP-chip on Ciona intestinalis embryo (early gastrula) Sample 2, Array 2 241,700 Kyoto University 2008-03-10 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.2 (of 2) (GPL6556) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged ZicL ChIP in Ciona intestinalis embryo (early Gastrula)
17 GSM300069 Brachyury ChIP-chip on Ciona intestinalis embryo (early-mid gastrula) Sample 1, Array 1 241,700 Kyoto University 2008-06-25 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.1 (of 2) (GPL6555) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Brachyury ChIP in Ciona intestinalis embryo (early-mid Gastrula)
18 GSM300071 Brachyury ChIP-chip on Ciona intestinalis embryo (early-mid gastrula) Sample 1, Array 2 241,700 Kyoto University 2008-06-25 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.2 (of 2) (GPL6556) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Brachyury ChIP in Ciona intestinalis embryo (early-mid Gastrula)
19 GSM300471 Brachyury ChIP-chip on Ciona intestinalis embryo (early-mid gastrula) Sample 2, Array 1 241,700 Kyoto University 2008-06-25 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.1 (of 2) (GPL6555) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Brachyury ChIP in Ciona intestinalis embryo (early-mid Gastrula)
20 GSM300475 Brachyury ChIP-chip on Ciona intestinalis embryo (early-mid gastrula) Sample 2, Array 2 241,700 Kyoto University 2008-06-25 [Tiling Array] Kyoto University Custom Agilent Ciona intestinails 242K Tiling Array No.2 (of 2) (GPL6556) genomic Ciona intestinalis
Ciona intestinalis		 intestine Whole Cell Extract (WCE) DNA GFP-tagged Brachyury ChIP in Ciona intestinalis embryo (early-mid Gastrula)
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