Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(337,685)
  Primates
(4,603)
  Rodents
(144,162)
  Mammals
(7,567)
  Vertebrates
(10,892)
  Invertebrates
(25,648)
  Plants
(51,883)
  Bacteria
(28,448)
  Viruses
(1,230)
  Phages
(45)
  Unclassified
(4,512)
  All
(618,114)
 
  SAGE NlaIII
(17)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(5,346)
  Tiling Array
(961)
  cDNA Array
(4,990)
  Oligo Array
(9,307)
  Bead Array
(404)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(4,594)
  Other
(6)
  All
(25,648)
 
  brain
(2,378)
  blood
(361)
  connective
(354)
  reproductive
(809)
  muscular
(154)
  digestive
(608)
  liver
(397)
  lung
(423)
  urinary
(13)
  endo/exo-crine
(196)
  embryo
(2,209)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(1,945)
  unclassified
(15,801)
  all
(25,648)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM336052 embryo hermaphrodites 9,306,695 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
embryo Embryo_hermaphrodites
2 GSM628271 r2d2[1] ovary total RNA 5,929,819 Memorial Sloan Kettering Cancer Center 2010-11-23 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
ovary r2d2[1] ovary total RNA
3 GSM628272 ago2[414] ovary total RNA 5,506,450 Memorial Sloan Kettering Cancer Center 2010-11-23 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
ovary ago2[414] ovary total RNA
4 GSM385821 Drosophila OSS cell small RNA libraries, rep3 5,373,262 Memorial Sloan Kettering Cancer Center 2009-03-24 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Drosophila OSS cells title:Drosophila OSS cell small RNA libraries, rep3 description:Small RNA data (technical replicate).
5 GSM336086 young adult males 5,084,112 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:young adult_males title:young adult males description:RNA enriched for small RNA species (<200nt)
6 GSM847430 wild type, 68 h, untreated 4,481,545 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina HiSeq 2000 (Caenorhabditis elegans) (GPL13657) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled Whole worms, adult, untreated
7 GSM336055 mid-L1 hermaphrodites 4,265,902 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:mid-L1_hermaphrodites title:mid-L1 hermaphrodites description:RNA enriched for small RNA species (<200nt)
8 GSM385748 Drosophila OSS cell small RNA libraries, rep2 4,258,000 Memorial Sloan Kettering Cancer Center 2009-03-24 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Drosophila OSS cells title:Drosophila OSS cell small RNA libraries, rep2 description:Small RNA data (technical replicate).
9 GSM847423 control transgene 4,202,346 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled Whole worms, control transgene
10 GSM847429 wild type, 52 h, untreated 4,080,668 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina HiSeq 2000 (Caenorhabditis elegans) (GPL13657) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled Whole worms, larvae, untreated
11 GSM336058 mid-L3 hermaphrodites 3,987,491 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:mid-L3_hermaphrodites title:mid-L3 hermaphrodites description:RNA enriched for small RNA species (<200nt)
12 GSM336056 mid-L2 hermaphrodites 3,870,829 Yale University 2008-10-23 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:mid-L2_hermaphrodites title:mid-L2 hermaphrodites description:RNA enriched for small RNA species (<200nt)
13 GSM371638 small RNA from S2 cells (S2-NP) 3,814,663 Memorial Sloan Kettering Cancer Center 2009-02-16 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Drosophila melanogaster S2 cells title:small RNA from S2 cells (S2-NP) description:Small RNA data.
14 GSM847424 siRNA sensor transgene 3,573,882 Massachusetts General Hospital 2011-12-09 [HT Sequencing] Illumina Genome Analyzer II (Caenorhabditis elegans) (GPL9269) SRA Caenorhabditis elegans
Caenorhabditis elegans
pooled Whole worms, siRNA sensor transgene
15 GSM315554 AmphimedonEmb2 3,542,176 Whitehead Institute 2008-08-26 [HT Sequencing] Illumina Genome Analyzer (Amphimedon queenslandica) (GPL9304) SRA Amphimedon queenslandica
Amphimedon queenslandica
embryo mixed embryos
16 GSM590760 Sal1_1_REFERENCE 3,533,701 The Scripps Research Institute 2010-09-06 [Tiling Array] Winzeler Lab Plasmodium vivax tiling array (PvivaxLib520507) (GPL10882) genomic Plasmodium vivax
Plasmodium vivax
unclassified source_name:Genomic DNA from Sal1 reference title:Sal1_1_REFERENCE
17 GSM590761 Sal1_2_REFERENCE 3,533,701 The Scripps Research Institute 2010-09-06 [Tiling Array] Winzeler Lab Plasmodium vivax tiling array (PvivaxLib520507) (GPL10882) genomic Plasmodium vivax
Plasmodium vivax
unclassified source_name:Genomic DNA from Sal1 reference title:Sal1_2_REFERENCE
18 GSM590762 IQ07 3,533,701 The Scripps Research Institute 2010-09-06 [Tiling Array] Winzeler Lab Plasmodium vivax tiling array (PvivaxLib520507) (GPL10882) genomic Plasmodium vivax
Plasmodium vivax
unclassified source_name:Genomic DNA from Peruvian patient isolate title:IQ07
19 GSM315553 AmphimedonEmb1 3,410,528 Whitehead Institute 2008-08-26 [HT Sequencing] Illumina Genome Analyzer (Amphimedon queenslandica) (GPL9304) SRA Amphimedon queenslandica
Amphimedon queenslandica
embryo mixed embryos
20 GSM119342 Total RNA from Drosophila Embryo at 0-2 hrs 3,156,535 Affymetrix, Inc. 2006-07-07 [Tiling Array] Affymetrix Drosophila Melanogaster Antisense Tiling Array (GPL3923) RNA Drosophila melanogaster
Drosophila melanogaster
embryo Whole Embryo at 0-2 hrs
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