Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,845)
  Primates
(133)
  Rodents
(5,613)
  Mammals
(406)
  Vertebrates
(547)
  Invertebrates
(1,928)
  Plants
(2,576)
  Bacteria
(1,515)
  Viruses
(10)
  Phages
(0)
  Unclassified
(130)
  All
(29,767)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(295)
  Tiling Array
(178)
  cDNA Array
(139)
  Oligo Array
(1,062)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(254)
  Other
(0)
  All
(1,928)
 
  brain
(140)
  blood
(21)
  connective
(18)
  reproductive
(33)
  muscular
(0)
  digestive
(80)
  liver
(0)
  lung
(0)
  urinary
(12)
  endo/exo-crine
(42)
  embryo
(44)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(96)
  unclassified
(1,442)
  all
(1,928)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM435291 CEH-14 L2 replicate 1 GFP 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP73, CEH-14:GFP:3xFLAG animals title:CEH-14 L2 replicate 1 GFP description:Chromatin IP against anti-GFP
2 GSM435292 CEH-14 L2 replicate 2 GFP 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP73, CEH-14:GFP:3xFLAG animals title:CEH-14 L2 replicate 2 GFP description:Chromatin IP against anti-GFP
3 GSM435293 CEH-14 L2 replicate 2 Input 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP73, CEH-14:GFP:3xFLAG animals title:CEH-14 L2 replicate 2 Input description:No ChIP just input DNA from the same preparation
4 GSM435300 EOR-1 L3 replicate 1 GFP 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP81, EOR-1:GFP:3xFLAG animals title:EOR-1 L3 replicate 1 GFP description:Chromatin IP against anti-GFP
5 GSM435301 EOR-1 L3 replicate 1 Input 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP81, EOR-1:GFP:3xFLAG animals title:EOR-1 L3 replicate 1 Input description:No ChIP just input DNA from the same preparation
6 GSM435302 EOR-1 L3 replicate 2 GFP 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP81, EOR-1:GFP:3xFLAG animals title:EOR-1 L3 replicate 2 GFP description:Chromatin IP against anti-GFP
7 GSM435303 EOR-1 L3 replicate 2 Input 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP81, EOR-1:GFP:3xFLAG animals title:EOR-1 L3 replicate 2 Input description:No ChIP just input DNA from the same preparation
8 GSM435316 HLH-8 L3 replicate 1 GFP 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP74, HLH-8:GFP:3xFLAG animals title:HLH-8 L3 replicate 1 GFP description:Chromatin IP against anti-GFP library_strategy: ChIP-seq
9 GSM435317 HLH-8 L3 replicate 1 Input 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP74, HLH-8:GFP:3xFLAG animals title:HLH-8 L3 replicate 1 Input description:No ChIP just input DNA from the same preparation
10 GSM435318 HLH-8 L3 replicate 2 GFP 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP74, HLH-8:GFP:3xFLAG animals title:HLH-8 L3 replicate 2 GFP description:Chromatin IP against anti-GFP
11 GSM435319 HLH-8 L3 replicate 2 Input 0 Yale University 2009-07-31 [HT Sequencing] Illumina Genome Analyzer (Caenorhabditis elegans) (GPL9309) SRA Caenorhabditis elegans
Caenorhabditis elegans
unclassified source_name:OP74, HLH-8:GFP:3xFLAG animals title:HLH-8 L3 replicate 2 Input description:No ChIP just input DNA from the same preparation
12 GSM444796 Toxoplasma gondii type I RH-JSR tachyzoite expression - sample 1 9,045 Washington University School of Medicine 2009-08-26 [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) RNA Toxoplasma gondii
Toxoplasma gondii
unclassified source_name:Type I RH-JSR tachyzoite title:Toxoplasma gondii type I RH-JSR tachyzoite expression - sample 1 description:type I RH-JSR tachyzoite expression using the Affymetrix Toxoplasma gondii Genechip
13 GSM444797 Toxoplasma gondii type I RH-JSR tachyzoite expression - sample 2 9,045 Washington University School of Medicine 2009-08-26 [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) RNA Toxoplasma gondii
Toxoplasma gondii
unclassified source_name:Type I RH-JSR tachyzoite title:Toxoplasma gondii type I RH-JSR tachyzoite expression - sample 2 description:type I RH-JSR tachyzoite expression using the Affymetrix Toxoplasma gondii Genechip
14 GSM444798 Toxoplasma gondii type I RH-JSR tachyzoite expression - sample 3 9,045 Washington University School of Medicine 2009-08-26 [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) RNA Toxoplasma gondii
Toxoplasma gondii
unclassified source_name:Type I RH-JSR tachyzoite title:Toxoplasma gondii type I RH-JSR tachyzoite expression - sample 3 description:type I RH-JSR tachyzoite expression using the Affymetrix Toxoplasma gondii Genechip
15 GSM427868 Kc167_42.2 0 Washington University 2009-07-15 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Kc167 cell line title:Kc167_42.2 description:Oligo-dT selected, double stranded cDNA single read sequencing processed data file: 42_2.gff processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
16 GSM427869 Kc167_42.3 0 Washington University 2009-07-15 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Kc167 cell line title:Kc167_42.3 description:Oligo-dT selected, double stranded cDNA single read sequencing processed data file: 42_3.gff processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
17 GSM427870 Kc167_42.4 0 Washington University 2009-07-15 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Kc167 cell line title:Kc167_42.4 description:Oligo-dT selected, double stranded cDNA single read sequencing processed data file: 42_4.gff processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
18 GSM427871 Kc167_42.6 0 Washington University 2009-07-15 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Kc167 cell line title:Kc167_42.6 description:Oligo-dT selected, double stranded cDNA single read sequencing processed data file: 42_6.gff processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
19 GSM427872 Kc167_42.7 0 Washington University 2009-07-15 [HT Sequencing] Illumina Genome Analyzer (Drosophila melanogaster) (GPL9058) SRA Drosophila melanogaster
Drosophila melanogaster
unclassified source_name:Kc167 cell line title:Kc167_42.7 description:Oligo-dT selected, double stranded cDNA single read sequencing processed data file: 42_7.gff processed data file: Kc167.wig (linked as a supplementary file to the Series GSE17107 record)
20 GSM425830 F.candida_Heat_Shock_rep1 10,806 Vrije Universiteit 2009-07-09 [Oligo Array] ISQ Chip Folsomia candida Collembola VU version 1.0 (GPL6381) RNA Folsomia candida
Folsomia candida
unclassified source_name:F.candida, Reference F.candida, Heat shock title:F.candida_Heat_Shock_rep1 description:No additional information available.
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