Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(10,585)

Invertebrates
(220)

Viruses
(0)

Phages
(0)

Unclassified
(28)

All
(16,209)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(57)

Tiling Array
(0)

cDNA Array
(31)

Oligo Array
(96)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(36)

Other
(0)

All
(220)

brain
(13)

blood
(0)

connective
(0)

reproductive
(3)

muscular
(0)

digestive
(0)

liver
(0)

lung
(14)

urinary
(0)

endo/exo-crine
(2)

embryo
(18)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(170)

all
(220)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM612813	WT_6	18,952	IRB Barcelona	2010-10-25	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:w1118 title:WT_6
2	GSM612812	WT_5	18,952	IRB Barcelona	2010-10-25	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:w1118 title:WT_5
3	GSM612811	WT_4	18,952	IRB Barcelona	2010-10-25	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:w1118 title:WT_4
4	GSM612810	WT_3	18,952	IRB Barcelona	2010-10-25	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:w1118 title:WT_3
5	GSM612809	WT_2	18,952	IRB Barcelona	2010-10-25	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:w1118 title:WT_2
6	GSM612808	WT_1	18,952	IRB Barcelona	2010-10-25	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:w1118 title:WT_1
7	GSM947256	WT17-c	0	CIC bioGUNE	2012-06-12	[HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061)	SRA	Drosophila melanogaster	embryo	Pool of 50 embryos
8	GSM947255	WT17-ab	0	CIC bioGUNE	2012-06-12	[HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061)	SRA	Drosophila melanogaster	embryo	Pool of 50 embryos
9	GSM947249	WT16-c	0	CIC bioGUNE	2012-06-12	[HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061)	SRA	Drosophila melanogaster	embryo	Pool of 50 embryos
10	GSM947248	WT16-ab	0	CIC bioGUNE	2012-06-12	[HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061)	SRA	Drosophila melanogaster	embryo	Pool of 50 embryos
11	GSM662333	wt - Nov2010 - rep2	18,952	IRB Barcelona	2011-01-26	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:wild type title:wt - Nov2010 - rep2
12	GSM662332	wt - Nov2010 - rep1	18,952	IRB Barcelona	2011-01-26	[GeneChip] [Drosophila_2] Affymetrix Drosophila Genome 2.0 Array (GPL1322)	RNA	Drosophila melanogaster	unclassified	source_name:wild type title:wt - Nov2010 - rep1
13	GSM353358	wingless pathway activation - replicate 3	42,034	CMRB	2008-12-22	[Oligo Array] Blanchette/Green Splice Junction array (GPL7508)	RNA	Drosophila melanogaster	unclassified	source_name:wingless activated S2 cells control S2 cells title:wingless pathway activation - replicate 3 description:Global analysis of alternative splicing regulation by wingless signalling in Drosophila cells
14	GSM353357	wingless pathway activation - replicate 2	42,034	CMRB	2008-12-21	[Oligo Array] Blanchette/Green Splice Junction array (GPL7508)	RNA	Drosophila melanogaster	unclassified	source_name:wingless activated S2 cells control S2 cells title:wingless pathway activation - replicate 2 description:Global analysis of alternative splicing regulation by wingless signalling in Drosophila cells
15	GSM353356	wingless pathway activation - replicate 1	42,034	CMRB	2008-12-21	[Oligo Array] Blanchette/Green Splice Junction array (GPL7508)	RNA	Drosophila melanogaster	unclassified	source_name:wingless activated S2 cells control S2 cells title:wingless pathway activation - replicate 1 description:Global analysis of alternative splicing regulation by wingless signalling in Drosophila cells
16	GSM217242	trxE3/trxB11_larvae_(Replicate4)	16,416	Universitat de Barcelona	2007-08-10	[Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797)	RNA	Drosophila melanogaster	unclassified	source_name:w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 2) w1118;+;+ isogenic wt larvae (pool) title:trxE3/trxB11_larvae_(Replicate4) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
17	GSM217241	trxE3/trxB11_larvae_(Replicate3)	16,416	Universitat de Barcelona	2007-08-10	[Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797)	RNA	Drosophila melanogaster	unclassified	source_name:w1118;+;+ isogenic wt larvae (pool) w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 2) title:trxE3/trxB11_larvae_(Replicate3) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
18	GSM217240	trxE3/trxB11_larvae_(Replicate2)	16,416	Universitat de Barcelona	2007-08-10	[Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797)	RNA	Drosophila melanogaster	unclassified	source_name:w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 1) w1118;+;+ isogenic wt larvae (pool) title:trxE3/trxB11_larvae_(Replicate2) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
19	GSM217239	trxE3/trxB11_larvae_(Replicate1)	16,416	Universitat de Barcelona	2007-08-10	[Oligo Array] 01_Drosophila_16K_Universitat_Barcelona (GPL3797)	RNA	Drosophila melanogaster	unclassified	source_name:w1118;+;+ isogenic wt larvae (pool) w1118;+;trxE3/trxB11 isogenized larvae (Biological Replicate 1) title:trxE3/trxB11_larvae_(Replicate1) description:Total RNA from w1118;+;+ larvae was pooled and used as a common reference in four microarrays against w1118;+;trxE3/trxB11 total RNA coming from two different extractions to take biological differences into account. Two amplifications from w1118;+;+ and one from each w1118;+;trxE3/trxB11 replicate were performed with the Amino-Allyl Messageamp II aRNA Amplification Kit (Ambion, Inc) to obtain amplified RNA (aRNA). The arrays from each replicate pair were hybridized with the same amplified RNA from sample and common reference but with dyes (Cy3 and Cy5 from Amersham, Inc) swapped to take dye-bias into account.
20	GSM668384	trik4_wt_rep2	0	IRB Barcelona	2011-02-04	[HT Sequencing] Illumina Genome Analyzer II (Drosophila melanogaster) (GPL9061)	SRA	Drosophila melanogaster	unclassified	source_name:wing imaginal discs, wild type, H3K4me3 ChIP title:trik4_wt_rep2 description:Chromatin IP against H3K4me3 in wild type white dm.

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