Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(13)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(274)		   Tiling Array
(10)		   cDNA Array
(146)		   Oligo Array
(227)		   Bead Array
(5)		   Protein Array
(1)		   Antibody
(0)		   RT-PCR
(5)		   HT-Seq
(70)		   Other
(2)		   All
(754)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Expression data from porcine adrenal gland (GSE25138) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2010-11-04 Sus scrofa domesticus
Sus scrofa domestica domesticus		 385,968
(24,123 x 16) 		16 by_platform
by_series
2 Comparative Placental Efficiency in Swine Examined Using Expression Profiling (GSE10441) [GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) North Carolina State University 2008-02-07 Sus scrofa
Sus scrofa domestica		 7,969,050
(265,635 x 30) 		30 by_platform
by_series
3 Tissue-Specific Transcriptional Profiling of Epigenetic Asymmetry in Porcine Parthenogenetic Fetuses1 (GSE10443) [GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) North Carolina State University 2008-02-07 Sus scrofa
Sus scrofa domestica		 6,375,240
(265,635 x 24) 		5 8 6 5 by_platform
by_series
4 Gene expression data from muscle sample of pig commercial herd Pix(DLxDE). (GSE32112) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2011-09-14 Sus scrofa
Sus scrofa domestica		 4,993,461
(24,123 x 207) 		207 by_platform
by_series
5 Gene expression data from liver sample of pig commercial herd Pix(DLxDE). (GSE25445) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2010-11-17 Sus scrofa
Sus scrofa domestica		 3,618,450
(24,123 x 150) 		150 by_platform
by_series
6 Fetal programming of hepatic transcriptome in response to gestational dietary protein levels in the pig (GSE25484) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2010-11-18 Sus scrofa
Sus scrofa domestica		 2,967,129
(24,123 x 123) 		123 by_platform
by_series
7 Impact of breed and sex on porcine endocrine transcriptome: A Bayesian biometrical analysis (GSE14739) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Universitat Autonoma Barcelona 2009-02-06 Sus scrofa
Sus scrofa domestica		 1,929,840
(24,123 x 80) 		16 16 16 32 by_platform
by_series
8 Gene expression data from Muscle Longissimus dorsi sample of F2 animals (GSE10204) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2008-01-18 Sus scrofa
Sus scrofa domestica		 1,785,102
(24,123 x 74) 		74 by_platform
by_series
9 Fetal programming of muscle transcriptome in response to gestational dietary protein levels in the pig (GSE33740) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2011-11-16 Sus scrofa
Sus scrofa domestica		 1,664,487
(24,123 x 69) 		69 by_platform
by_series
10 Muscle gene expression patterns in pigs with divergent phenotypes for fatness traits (GSE19275) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) IRTA 2009-12-02 Sus scrofa
Sus scrofa domestica		 1,640,364
(24,123 x 68) 		68 by_platform
by_series
11 A linear-mixed model approach to identify expressed SFPs using short oligo microarrays - Placenta vs. Fibroblast (GSE10446) [GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) North Carolina State University 2008-02-08 Sus scrofa
Sus scrofa domestica		 1,593,810
(265,635 x 6) 		3 3 by_platform
by_series
12 A linear-mixed model approach to identify expressed single nucleotide polymorphisms using short oligo microarrays (GSE10447) [GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) North Carolina State University 2008-02-08 Sus scrofa
Sus scrofa domestica		 1,593,810
(265,635 x 6) 		6 by_platform
by_series
13 Transcriptome architecture across tissues in the pig (GSE10898) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Universitat Autonoma Barcelona 2008-03-19 Sus scrofa
Sus scrofa domestica		 1,543,872
(24,123 x 64) 		12 4 12 8 8 4 12 4 by_platform
by_series
14 Expression data from mediastinal lymph nodes and blood samples of piglets experimentally infected with PCV2 (GSE14791) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) CReSA 2009-02-11 Sus scrofa
Sus scrofa domestica		 1,519,749
(24,123 x 63) 		63 by_platform
by_series
15 Fetal programming of hepatic transcriptome in response to gestational dietary protein levels in the pig (HP data set) (GSE25483) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2010-11-18 Sus scrofa
Sus scrofa domestica		 1,519,749
(24,123 x 63) 		63 by_platform
by_series
16 Fetal programming of hepatic transcriptome in response to gestational low dietary protein levels in the pig (GSE31191) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2011-08-03 Sus scrofa
Sus scrofa domestica		 1,471,503
(24,123 x 61) 		61 by_platform
by_series
17 Fetal programming of hepatic transcriptome in response to gestational dietary protein levels in the pig (AP data set) (GSE25482) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Leibniz Institute for Farm Animal Biology (FBN) 2010-11-18 Sus scrofa
Sus scrofa domestica		 1,447,380
(24,123 x 60) 		60 by_platform
by_series
18 Transcriptomes From the Deep Cones During FIbroproliferative Cutaneous Healing in the Duroc/Yorkshire Porcine Model (GSE26095) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Iowa State University 2010-12-16 Sus scrofa
Sus scrofa domestica		 1,447,380
(24,123 x 60) 		60 by_platform
by_series
19 Early postmortem gene expression and its relationship to composition and quality traits in pig Longissimus dorsi muscle (GSE32179) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) irta 2011-09-16 Sus scrofa
Sus scrofa domestica		 1,423,257
(24,123 x 59) 		59 by_platform
by_series
20 The Impact of Environment on Microbial Diversity and Global Transcriptional Responses in the Developing Pig Gut (GSE15256) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Rowett Research Institute 2009-03-17 Sus scrofa
Sus scrofa domestica		 1,302,642
(24,123 x 54) 		54 by_platform
by_series
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