Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(37)
  SAGE RsaI
(0)
  SAGE Sau3A
(2)
  MPSS
(0)
  GeneChip
(6,782)
  Tiling Array
(313)
  cDNA Array
(3,714)
  Oligo Array
(7,645)
  Bead Array
(1,151)
  Protein Array
(5)
  Antibody
(0)
  RT-PCR
(43)
  HT-Seq
(1,197)
  Other
(79)
  All
(20,968)
 
  brain
(89)
  blood
(166)
  connective
(206)
  reproductive
(142)
  muscular
(125)
  digestive
(17)
  liver
(60)
  lung
(21)
  urinary
(32)
  endo/exo-crine
(32)
  embryo
(61)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(15)
  unclassified
(231)
  all
(1,197)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM957057 kidney 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
kidney kidney
2 GSM957058 pancreas 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
pancreas pancreas
3 GSM957059 heart 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
heart heart
4 GSM957060 liver 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
liver/hepato liver
5 GSM957061 brain 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
cerebrum brain
6 GSM957062 testis 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
testis testis
7 GSM957063 ovary 0 BGI-Shenzhen, Shenzhen 518083, China 2012-07-06 [HT Sequencing] Illumina HiSeq 2000 (Tupaia chinensis) (GPL15772) SRA Tupaia chinensis
Tupaia chinensis
ovary ovary
8 GSM266833 Echidna testis 18-24 nt 945,309 Cold Spring Harbor Laboratory 2008-02-19 [HT Sequencing] Illumina Genome Analyzer (Tachyglossus aculeatus) (GPL11058) SRA Tachyglossus aculeatus
Tachyglossus aculeatus
testis Adult testis
9 GSM602249 Testis tissue small RNA 2,024,525 Sichuan Agricultural University 2010-09-29 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
testis Testis
10 GSM446691 prenatal, fetus at day 75 1,467,142 Sichuan Agricultural University 2009-08-31 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
bone Mixture of all tissues, only discard the bones Three female and three male were pooled.
11 GSM752048 PAD 1,396,180 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
adipos pericardial adipose
12 GSM602248 Ovary tissue small RNA 1,374,417 Sichuan Agricultural University 2010-09-29 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
ovary Ovary
13 GSM752067 ULB 1,160,238 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
unclassified source_name:upper layer of backfat title:ULB description:Tissue from three females were pooled.
14 GSM752040 IAD 1,033,218 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
adipos intermuscular adipose
15 GSM752041 ILB 877,493 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
unclassified source_name:inner layer of backfat title:ILB description:Tissue from three females were pooled.
16 GSM752039 GOM 685,218 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
skin greater omentum
17 GSM752063 RAD 660,198 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
adipos retroperitoneal adipose
18 GSM752038 ASA 655,809 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
adipos abdominal subcutaneous adipose
19 GSM752074 LDM 653,869 Sichuan Agricultural University 2011-06-30 [HT Sequencing] Illumina Genome Analyzer II (Sus scrofa) (GPL10945) SRA Sus scrofa
Sus scrofa domestica
muscle longissimus doris muscle
20 GSM446690 prenatal, fetus at day 60 587,856 Sichuan Agricultural University 2009-08-31 [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) SRA Sus scrofa
Sus scrofa domestica
bone Mixture of all tissues, only discard the bones Three female and three male were pooled.
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