Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11314 NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH 2,166,464 United States Department of Agriculture 2010-12-14 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH, This array was designed based on Btau_UMD3.0. The Btau_UMD3.1 assembly is identical in almost all respects to UMD3.0. All chromosomes are unchanged. For additional information, see http://www.cbcb.umd.edu/research/bos_taurus_assembly.shtml . The supplementary file 'GPL11314_Btau_4.0.txt' contains the results of LIFTOVER (default setting) to convert the positions of probes from UMD3.0 to Btau_4.0. About 95% (~2,066,000) of the probes were converted successfully.
2 GPL9664 NimbleGen agrsci porcine 2.1M v1 2,143,371 Aarhus University, Faculty of Agricultural Sciences 2009-11-12 NimbleGen Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, NimbleGen agrsci porcine 2.1M v1, Annotation in this record based on the porcine pre genome assembly, version 6 native array description files: Sscorfa_U_Aarhus_CB_cgh_HX1.ndf Sscorfa_U_Aarhus_CB_cgh_HX1.pos
3 GPL14675 Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1 420,288 Texas A&M University 2011-10-05 Agilent Technologies Equus caballus
Equus caballus		 Oligo Array in situ oligonucleotide, Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1, Arrays of this design have barcodes that begin with 16027318 or 2527318. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
4 GPL15316 Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881 420,288 Texas A&M University 2012-03-06 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881, CanFam2.0 Arrays of this design have barcodes that begin with 16027178 or 2527178. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
5 GPL16181 Agilent-024881 Bovine Whole Genome Array 400K 7-31 420,288 Texas A&M University 2012-10-16 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Agilent-024881 Bovine Whole Genome Array 400K 7-31, Array design based on the bosTau4.0 (Baylor 4.0) assembly. Arrays of this design have barcodes that begin with 16024881 or 2524881. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
6 GPL16182 Agilent-025320 Bovine Whole Genome Array 400K 9-8-09 420,288 Texas A&M University 2012-10-16 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Agilent-025320 Bovine Whole Genome Array 400K 9-8-09, Array design based on the bosTau4.0 (Baylor 4.0) assembly. Arrays of this design have barcodes that begin with 16025320 or 2525320. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
7 GPL6553 Nimblegen 385K pig array CGH 392,778 Aarhus University, Faculty of Agricultural Sciences 2008-03-06 Nimblegen Systems Inc. Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Nimblegen 385K pig array CGH, The probes on the array covered part of the chromosomes 4, 7, 14 and 17 for the Sus Scrofa preliminary assembly version 3, August 2007. The sequence data were produced by the Sus Scrofa Sequencing Group at the Sanger Institute. Detailed information about probe design is available in the Nimblegen technical note (see Web Link).
8 GPL9314 NimbleGen Canis familiaris 385K CanFam2_WG_CGH 389,319 BC Cancer Research Centre 2009-09-29 NimbleGen Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, NimbleGen Canis familiaris 385K CanFam2_WG_CGH, Dog 2.0
9 GPL7501 Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications. 386,428 University of Washington 2008-10-17 Nimblegen Canis lupus familiaris
Canis lupus familiaris		 Oligo Array spotted oligonucleotide, Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications., Segmental duplications were computationally identified and then were targeted with 368,360 probes. The remaining available probes were placed in 5kb flanking regions to the segmental duplications (9,278 probes) and in single copy control regions (8,790 probes).
10 GPL9865 NimbleGen Bos taurus Btau31 WG CGH 385,048 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau31 WG CGH,
11 GPL9866 NimbleGen Bos taurus Btau40 WG CGH 384,025 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau40 WG CGH,
12 GPL10155 Agilent-025242 SurePrint G3 Bovine CGH Microarray 4x180K (Feature Number version) 180,880 Agilent Technologies 2010-03-09 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Agilent-025242 SurePrint G3 Bovine CGH Microarray 4x180K (Feature Number version), Bovine (bosTau4) CGH Whole Genome Microarray 4x180K Arrays of this design have barcodes that begin with 16025242 or 2525242. Data table annotations based on build bosTau4:Btau_4.0:Oct2007. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
13 GPL10156 Agilent-025522 SurePrint G3 Canine CGH Microarray 4x180K (Feature Number version) 180,880 Agilent Technologies 2010-03-09 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-025522 SurePrint G3 Canine CGH Microarray 4x180K (Feature Number version), C. familiaris (Dog) Genome CGH Microarray Rev2, 180K Arrays of this design have barcodes that begin with 16025522 or 2525522. Data table annotations based on build canFam2:v2.0:May2005. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
14 GPL11333 NimbleGen Dog 137K 12plex CGH array (090529_CanFam_TN_CGH) 136,929 University of Washington 2010-12-18 NimbleGen Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, NimbleGen Dog 137K 12plex CGH array (090529_CanFam_TN_CGH), A total of 1987 CNV regions with previous evidence of containing a CNV were targeted with 136930 probes. designfile: 090529_CanFam_TN_CGH.ndf designname: 090529_CanFam_TN_CGH designid: 10052 Genome build: canFam2
15 GPL11016 Agilent/INRA FH Sus scrofa 15K muscle array 125,952 INRA 2010-10-05 Agilent Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Agilent/INRA FH Sus scrofa 15K muscle array, A custom repertoire of 15,000 60-mer DNA probes targeting transcripts expressed in growing pig skeletal muscle. This repertoire was print on a multiplex microarray format : 8-plex microarray (eight individual 15K microarrays printed on a single slide)
16 GPL14908 INRA Sus scrofa 15K Adipose Tissue 125,952 INRA 2011-11-21 Agilent Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, INRA Sus scrofa 15K Adipose Tissue, a custom repertoire of 15,000 60-mer DNA probes targeting transcripts expressed in growing pig adipose tissue
17 GPL9461 CASPUR Aristaeus 95K version 1.0 94,928 University of Tuscia 2009-10-19 Combimatrix Corporation Ovis aries
Ovis aries		 Oligo Array in situ oligonucleotide, CASPUR Aristaeus 95K version 1.0, High-density (90k) in situ synthesized microarray for Ovis aries, designed by means of a pipeline of software instruments that, starting from unannotated redundant EST sequences deposited at NCBI, selects oligonucleotides suitable for in situ generation on chip. The chip carries 21,743 non-redundant Ovis aries features in quadruplicate, 73.4% of which are fully annotated and correspond to 10,190 genes, thus representing a good coverage of the sheep genome.
18 GPL3711 USDA Bovine 60mer 344k Array (oligo layout) 85,235 USDA 2006-05-01 NimbleGen Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, USDA Bovine 60mer 344k Array (oligo layout), There are 85235 distinct 60mer oligonucleotides on the array representing ~45383 unique bovine sequences/genes (4 identical spots/features for each 60 oligo).
19 GPL15392 Agilent-035654 Canine_murine miRNAv17 62,976 Zentrum für klinische Tiermedizin 2012-04-02 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-035654 Canine_murine miRNAv17, Canine and murine miRNAs Agilent miRBase v17 Arrays of this design have barcodes that begin with 16035654 or 2535654. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
20 GPL16709 Agilent-042421 Rabbit BDR version 2 62,976 INRA 2013-02-21 Agilent Technologies Oryctolagus cuniculus
Oryctolagus cuniculus		 Oligo Array in situ oligonucleotide, Agilent-042421 Rabbit BDR version 2, Arrays of this design have barcodes that begin with 16042421 or 2542421. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
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