| 1 |
Copy number variation in the porcine genome (GSE19047) |
[Oligo Array] NimbleGen agrsci porcine 2.1M v1 (GPL9664) |
Aarhus University, Faculty of Agricultural Sciences |
2009-11-16 |
Sus scrofa
 |
102,881,808
(2,143,371 x 48)
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48 |
by_platform
by_series |
| 2 |
Assessment of genome integrity with array CGH of cattle transgenic cell lines produced by homologous recombination and somatic cell cloning (GSE26132) |
[Oligo Array] NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH (GPL11314) |
United States Department of Agriculture |
2010-12-16 |
Bos taurus
 |
19,498,176
(2,166,464 x 9)
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9 |
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by_platform
by_series |
| 3 |
Analysis of copy number variations among diverse cattle breeds (GSE19866) |
[Oligo Array] NimbleGen Bos taurus Btau31 WG CGH (GPL9865) |
United States Department of Agriculture |
2010-01-12 |
Bos taurus
|
17,327,160
(385,048 x 45)
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45 |
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by_platform
by_series |
| 4 |
Analysis of copy number variations among diverse cattle breeds (GSE19866) |
[Oligo Array] NimbleGen Bos taurus Btau40 WG CGH (GPL9866) |
United States Department of Agriculture |
2010-01-12 |
Bos taurus
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17,281,125
(384,025 x 45)
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45 |
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by_platform
by_series |
| 5 |
Identification of Copy Number Variants in Dogs (GSE36333) |
[Oligo Array] Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881 (GPL15316) |
Texas A&M University |
2012-03-07 |
Canis lupus familiaris
 |
13,028,928
(420,288 x 31)
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1 |
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30 |
by_platform
by_series |
| 6 |
Copy number variation of individual cattle genomes using next-generation sequencing. (GSE31018) |
[Oligo Array] NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH (GPL11314) |
United States Department of Agriculture |
2011-07-28 |
Bos taurus
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10,832,320
(2,166,464 x 5)
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5 |
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by_platform
by_series |
| 7 |
Genomic and epigenomic analysis of taurine and indicine cattle (GSE41624) |
[Oligo Array] Agilent-025320 Bovine Whole Genome Array 400K 9-8-09 (GPL16182) |
Texas A&M University |
2012-10-16 |
Bos taurus
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10,086,912
(420,288 x 24)
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24 |
by_platform
by_series |
| 8 |
A Snapshot of Copy Number Variation in the pig genome (GSE10753) |
[Oligo Array] Nimblegen 385K pig array CGH (GPL6553) |
Aarhus University, Faculty of Agricultural Sciences |
2008-03-06 |
Sus scrofa
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9,426,672
(392,778 x 24)
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24 |
by_platform
by_series |
| 9 |
Genome-wide CNVs within and between breeds (GSE26170) |
[Oligo Array] NimbleGen Dog 137K 12plex CGH array (090529_CanFam_TN_CGH) (GPL11333) |
University of Washington |
2010-12-18 |
Canis lupus familiaris
|
8,763,456
(136,929 x 64)
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64 |
by_platform
by_series |
| 10 |
Identification of copy number variants in horses (GSE32702) |
[Oligo Array] Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1 (GPL14675) |
Texas A&M University |
2011-10-07 |
Equus caballus
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7,565,184
(420,288 x 18)
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18 |
by_platform
by_series |
| 11 |
Canine CNVs associated with canFam2 segmental duplications (GSE13266) |
[Oligo Array] Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications. (GPL7501) |
University of Washington |
2008-10-17 |
Canis lupus familiaris
|
7,342,132
(386,428 x 19)
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19 |
by_platform
by_series |
| 12 |
Gene expression in Longissimus lumborum in pig using the GenmascqChip (custom 15K Agilent microarray) (GSE28714) |
[Oligo Array] [Agilent-019442] Agilent/INRA FH Sus scrofa 15K muscle array [Probe Name version] (GPL11445) |
INRA |
2011-04-19 |
Sus scrofa
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4,942,600
(15,208 x 325)
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325 |
by_platform
by_series |
| 13 |
Transcriptional profiling of six normal Angus tissues (GSE23837) |
[Oligo Array] BOMC Bovine 25K v1.0 (GPL8813) |
University of Minnesota |
2010-08-26 |
Bos taurus
|
4,320,000
(30,000 x 144)
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|
48 |
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24 |
24 |
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48 |
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by_platform
by_series |
| 14 |
Mapping DNA structural variation in dogs (GSE18317) |
[Oligo Array] NimbleGen Canis familiaris 385K CanFam2_WG_CGH (GPL9314) |
BC Cancer Research Centre |
2009-09-29 |
Canis lupus familiaris
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3,893,190
(389,319 x 10)
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1 |
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9 |
by_platform
by_series |
| 15 |
Copy Number Abnormalities in Sporadic Canine Colorectal Cancers (GSE19318) |
[Oligo Array] NimbleGen Canis familiaris 385K CanFam2_WG_CGH (GPL9314) |
University of Georgia |
2009-12-04 |
Canis lupus familiaris
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3,893,190
(389,319 x 10)
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10 |
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by_platform
by_series |
| 16 |
Bovine Peyer's Patch Infected with Mycobacterium avium ssp. paratuberculosis and Mycobacterium avium ssp. avium (GSE13888) |
[Oligo Array] UIUC Bos taurus 13.2K 70-mer oligoarray (GPL2853) |
Texas A&M University |
2008-12-09 |
Bos taurus
|
3,870,720
(27,648 x 140)
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140 |
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by_platform
by_series |
| 17 |
Cardiac Resynchronization Therapy Corrects Dyssynchrony-induced Regional Gene Expression Changes on a Genomic Level (GSE14661) |
[Oligo Array] Agilent-013807 C. familiaris (Dog) Oligo Microarray G2519A option 004 (GPL7543) |
Johns Hopkins University |
2009-01-30 |
Canis lupus familiaris
|
3,366,040
(44,290 x 76)
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76 |
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by_platform
by_series |
| 18 |
Host Gene Expression Signatures Discriminate between Ferrets Infected with Genetically Similar H1N1 Strains. (GSE28967) |
[Oligo Array] SR ferret 44K v2.0 (GPL9774) |
Southern Research Institute |
2011-04-29 |
Mustela putorius furo
 |
2,759,589
(43,803 x 63)
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63 |
by_platform
by_series |
| 19 |
Gene expression in Longissimus lumborum and Semimembranosus skeletal muscles in pig using the GenmascqChip (custom 15K Agilent microarray) (GSE33957) |
[Oligo Array] [Agilent-019442] Agilent/INRA FH Sus scrofa 15K muscle array [Probe Name version] (GPL11445) |
INRA |
2011-11-26 |
Sus scrofa
|
2,737,440
(15,208 x 180)
|
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|
180 |
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by_platform
by_series |
| 20 |
Estrogen-responsive genes in the parenchyma and fat pad of the bovine mammary gland by microarray analysis (GSE4054) |
[Oligo Array] USDA Bovine 60mer 344k Array (oligo layout) (GPL3711) |
USDA |
2006-01-18 |
Bos taurus
|
2,727,520
(85,235 x 32)
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16 |
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16 |
by_platform
by_series |