Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1881 Qiagen-NRSP-8 porcine oligo array 13,677 Iowa State University 2005-02-23 Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Qiagen-NRSP-8 porcine oligo array, To develop broadly useful tools in porcine functional genomics, Qiagen-Operon and the USDA-NRSP-8 Swine Genome community collaborated to develop a novel 13K oligonucleotide set (porcine AROS 1.0/1.0 Extension; www.qiagen.com) . The Qiagen oligonucleotide set represents porcine cDNAs and EST, designed from TIGR Tentative Consensus cDNA sequences. These 70-mer oligonucleotides were designed to minimize cross-hybridization and to be as specific to the gene of interest as possible. Keywords = Pig Keywords = oligonucleotide microarray Keywords = tissue Keywords = infection Keywords = expression
2 GPL2853 UIUC Bos taurus 13.2K 70-mer oligoarray 27,648 University of Illinois 2005-09-16 W.M. Keck Center, University of Illinois Urbana-Champaign Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, UIUC Bos taurus 13.2K 70-mer oligoarray, The 13,257 oligos used in this microarray were obtained from normalized and subtracted cattle placenta and spleen cDNA libraries and based upon the earlier cDNA array platform GPL2864 (Everts et al., 2005 Vet. Immunol. Immunopathol. 105:235-245) and subtracted cDNA libraries created from embryonic (day 36 and day 64) and extra-embryonic (day 14 to 25) tissues (NCBI libraries 15993,15993, and 17188). Positive controls include beta actin (ACTB), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and hypoxanthine phosphoribosyltransferase (HPRT). Exogenous spiking controls are the soybean genes chlorophyll ab binding protein (CAB), Rubisco small chain 1 (RBS1), and major latex protein (MSG). Negative controls are Cot1 DNA, genomic DNA, spotting buffer, poly-A, and water. All 70-mer oligos were printed in duplicate on the array. Keywords: oligo, cow, placenta, bovine, embryo, microarray
3 GPL3301 USDA Bovine 60mer 344k Array (gene layout) 46,490 USDA 2006-01-04 NimbleGen Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, USDA Bovine 60mer 344k Array (gene layout), There are ~ 340,000 features on the array. The 86,191 disinct 60mer oligonucleotides on the array, each represented by 4 features (spots), represent 45,383 unique bovine sequences including 40808 Tentative Consensus sequneces from the TIGR Bos taurus Gene Index (BTGI, release 11.0) and 4,575 singletons from pooled mammary gland and gut library.
4 GPL3461 Duke Operon Porcine 10.5K Oligo Array 10,677 Duke Univeristy 2006-02-16 Oligos: Operon Printed by: Duke Microarray Facility Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Duke Operon Porcine 10.5K Oligo Array,
5 GPL3473 Bos Taurus Expression Array for Smooth Muscle Gene Expression 1,040 Boston University School of Medicine 2006-02-20 Boston University School of Medicine Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, Bos Taurus Expression Array for Smooth Muscle Gene Expression,
6 GPL3594 DIAS_PIG_27K2_v2 27,648 Aarhus University, Faculty of Agricultural Sciences 2006-03-27 Danish Institute of Agricultural Sciences Sus scrofa
Sus scrofa domestica		 Oligo Array mixed spotted oligonucleotide/cDNA, DIAS_PIG_27K2_v2,
7 GPL3707 Pig_Array_Ready Oligo set v1.0 14,688 University Of Minnesota 2006-04-26 Operon Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Pig_Array_Ready Oligo set v1.0, The Pig Genome Oligo Set Version 1.0 contains 10,665 70mer probes representing 10,665 Sus scrofa gene sequences with a hit to a known human, mouse, or pig gene transcript and some sequences containing a 3' expressed sequence tag (EST).The Pig Genome Oligo Extension Set Version 1.0 contains 2,632 70mer probes representing 2632 Sus scrofa gene sequences with at least one 3' EST. For our probe design we use state-of-the-art methodology and proprietary software.The probes are Tm normalized to 78ºC (±5ºC) and have a 5' amino linker. A sample set is also available.
8 GPL3711 USDA Bovine 60mer 344k Array (oligo layout) 85,235 USDA 2006-05-01 NimbleGen Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, USDA Bovine 60mer 344k Array (oligo layout), There are 85235 distinct 60mer oligonucleotides on the array representing ~45383 unique bovine sequences/genes (4 identical spots/features for each 60 oligo).
9 GPL3764 Porcine oligo micro array version 3 2,160 National Veterinary Institute, Technical University of Denmark 2006-05-15 National Veterinary Institute, Technical University of Denmark. Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Porcine oligo micro array version 3,
10 GPL3810 MSU BLO 8400 8,329 West Virginia University 2006-05-25 Michigan State University Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, MSU BLO 8400,
11 GPL4456 OSU RIGUA (Ruminant Immuno-inflammatory Gene Universal Array) 4K 4,096 Oklahoma State University 2006-10-16 Edinburgh Research and Innovation, The University of Edinburgh Sus scrofa,Bos taurus,Ovis aries
Sus scrofa domestica,Bos taurus,Ovis aries		 Oligo Array spotted oligonucleotide, OSU RIGUA (Ruminant Immuno-inflammatory Gene Universal Array) 4K, For additional information please contact Prof. John Hopkins or S. Rhind at The University of Edinburgh
12 GPL4594 URH-TALL_Bovine_Operon V1.1_1 19,200 INRA 2006-11-28 GenoToul/Biopuces Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, URH-TALL_Bovine_Operon V1.1_1,
13 GPL4872 SBTM Microarray Laboratory Operon Pig v1.0 10,652 Texas A&M Health Science Center 2007-02-14 The SBTM Microarray Laboratory, Systems Biology, 702 SW HK Dodgen Loop, Temple, TX 76504 Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, SBTM Microarray Laboratory Operon Pig v1.0,
14 GPL4930 Intestinal epithelial crypt and villi in conventional relative to germfree pig 13,297 UIUC 2007-03-06 University of Illinois at Urbana-Champaign, Urbana IL Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Intestinal epithelial crypt and villi in conventional relative to germfree pig,
15 GPL5171 Pork Quality Operon 70-mer oligo array 656 Sichuan Agricultural University 2007-05-17 Oligos:Qiagen-Operon, Printed by: National Engineering Center for Biochip(Shanghai,China) Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Pork Quality Operon 70-mer oligo array,
16 GPL5451 URH-TALL_Bovine_Operon V1.1_2 19,200 INRA 2007-06-29 GenoToul/Biopuces Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, URH-TALL_Bovine_Operon V1.1_2,
17 GPL5468 DIPROVAL - OPERON Sus scrofa AROS V1.0 24,336 University of Bologna 2007-07-04 MicroCribi - CRIBI Microarray Service - University of Padua, Laboratory: prof. G. Lanfranchi, c/o CRIBI, via Ugo bassi 58/B 35131 PADOVA, tel. 0039-049 8276162, fax 0039-049827 6159, http://microcribi.cribi.unipd.it Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, DIPROVAL - OPERON Sus scrofa AROS V1.0, This work was supported by a grant from FIRB of the Ministry of Education, University and Research (MIUR) of Italy –Scientific responsible person: Prof. Vincenzo Russo
18 GPL5972 DJF Pig oligo 27K1 ver1 27,648 Aarhus University, Faculty of Agricultural Sciences 2007-10-08 University of Aarhus, Faculty of Agricultural Sciences, Department of Genetics and Biotechnology, Group for Molecular Genetics and System Biology Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, DJF Pig oligo 27K1 ver1,
19 GPL6553 Nimblegen 385K pig array CGH 392,778 Aarhus University, Faculty of Agricultural Sciences 2008-03-06 Nimblegen Systems Inc. Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Nimblegen 385K pig array CGH, The probes on the array covered part of the chromosomes 4, 7, 14 and 17 for the Sus Scrofa preliminary assembly version 3, August 2007. The sequence data were produced by the Sus Scrofa Sequencing Group at the Sanger Institute. Detailed information about probe design is available in the Nimblegen technical note (see Web Link).
20 GPL6694 BOAC CattleOligo 13.2K + 8.7K 70-mer microarray v1 23,232 INRA 2008-04-07 CRB GADIE Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, BOAC CattleOligo 13.2K + 8.7K 70-mer microarray v1, spotted oligonucleotide
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