Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page

An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Human (502,421)   Primates (4,928)   Rodents (181,106)   Mammals (16,260)   Vertebrates (18,263)   Invertebrates (37,338)   Plants (91,454)   Bacteria (39,082)   Viruses (1,266)   Phages (101)   Unclassified (5,242)   All (898,944)

SAGE NlaIII (0)   SAGE RsaI (0)   SAGE Sau3A (2)   MPSS (0)   GeneChip (5,102)   Tiling Array (0)   cDNA Array (3,525)   Oligo Array (5,950)   Bead Array (559)   Protein Array (5)   Antibody (0)   RT-PCR (0)   HT-Seq (0)   Other (0)   All (16,260)     brain (0)   blood (12)   connective (0)   reproductive (3)   muscular (10)   digestive (0)   liver (0)   lung (1)   urinary (2)   endo/exo-crine (2)   embryo (5)   adult aerial structure (0)   young aerial structure (0)   root (0)   meristem/growing tissue (0)   flower/sexual organ (0)   seed/fruit/grain (0)   pooled (0)   unclassified (2)   all (0)   Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification Keywords used for the classification are shown with bold font. 1 GSM29563 Bovine circulating CD4 T lymphocytes 26,736 National Animal Disease Center 2004-08-25 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus lymphnode circulating bovine CD4 lymphocytes 2 GSM39287 bovine CD8 lymphocytes 25,442 National Animal Disease Center 2005-01-21 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus lymphnode bovine circulating CD8 lymphocytes 3 GSM11383 bovine immature B cell 24,205 National Animal Disease Center 2003-10-15 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus lymphnode ileal Peyer's patch follicle 4 GSM154135 Bovine Macrophage Cells Control 21,951 USDA, ARS, NADC 2007-01-05 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus peripheral blood Bovine macrophage 5 GSM154617 Bovine BL3 cells acutely infected with BVDV2 strain 296c 21,314 National Animal Disease Center 2007-01-10 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus unclassified source_name:Bovine BL3 cells infected with BVDV2 strain 296c title:Bovine BL3 cells acutely infected with BVDV2 strain 296c description:SAGE library construction was done using the microSAGE protocol. 6 GSM154573 Bovine Macrophage Cells Tpl Treated 19,904 USDA, ARS, NADC 2007-01-10 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus peripheral blood Bovine macrophage 7 GSM24604 bovine gamma/delta T cells 18,865 National Animal Disease Center 2004-06-04 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus lymphnode circulating gamma/delta T cells 8 GSM154615 Bovine BL3 cells under normal culture conditions 18,406 National Animal Disease Center 2007-01-10 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus unclassified source_name:Bovine BL3 cells title:Bovine BL3 cells under normal culture conditions description:SAGE library construction was done using the microSAGE protocol. 9 GSM3036 Bovine Renal Glomerular Endothelial Cells 16,699 Albert Einstein College of Medicine 2002-12-04 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus vein Cultured Primary Glomerular Endothelial Cells 10 GSM48353 Bovine granulosa cells from cohort follicles 15,661 University of Glasgow 2005-04-18 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus ovary Granulosa cells harvested from largest cohort follicles growing in the first follicle wave of the estrous cycle. Follicles were dissected from ovaries following slaughter of 4 Holstein cows at 1.3 days after wave emergence. Total RNA extracted from granulosa cells of the 4 follicles was pooled for generation of the SAGE library. Keywords = Bovine Reproduction Keywords = Ovary Keywords = dominant follicle selection Keywords = Granulosa cell 11 GSM48351 Bovine granulosa cells from dominant follicles 13,285 University of Glasgow 2005-04-18 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus ovary Granulosa cells harvested from dominant follicles belonging to the first follicle wave of the estrous cycle. Follicles were dissected from ovaries following slaughter of 4 Holstein cows at 2.6 days after wave emergence. Total RNA from granulosa cells of the 4 follicles was pooled for generation of the SAGE library. Keywords = Bovine Reproduction Keywords = Ovary Keywords = dominant follicle selection Keywords = Granulosa cell 12 GSM48352 Bovine granulosa cells from subordinate follicles 12,638 University of Glasgow 2005-04-18 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus ovary Granulosa cells harvested from largest subordinate follicles belonging to the first follicle wave of the estrous cycle. Follicles were dissected from ovaries following slaughter of 4 Holstein cows at 2.6 days after wave emergence. Total RNA extracted from granulosa cells of the 4 follicles was pooled for generation of the SAGE library.. Keywords = Bovine Reproduction Keywords = Ovary Keywords = dominant follicle selection Keywords = Granulosa cell 13 GSM3037 Bovine Aortic Endothelial Cells 12,122 Albert Einstein College of Medicine 2002-12-04 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus artery/aorta Cultured Bovine Aortic Endothelial Cells 14 GSM11027 normal MDBK cells 4,409 National Animal Disease Center 2003-10-08 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus kidney Madin-Darby bovine kidney cells 15 GSM11028 BVDV2-infected MDBK cells 4,345 National Animal Disease Center 2003-10-08 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus kidney Madin-Darby bovine kidney cells were infected at 40% cofluency with MOI of 1.0 of BVDV2 strain 1373. Cells were collected at 48 hours post-infection when cells were 95% confluent 16 GSM237688 Mammary_biopsy_IMF4_pooled (SAGE) 1,352 USDA-ARS, BARC 2007-10-15 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus breast biopsy of mammary parenchyma, milked 4 times daily beginning at day 4 of lactation, sampled at approx. day 7 of lactation 17 GSM237687 Mammary_biopsy_control_pooled (SAGE) 1,148 USDA-ARS, BARC 2007-10-15 [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) SAGE Bos taurus breast biopsy of mammary parenchyma, milked twice daily, approx. day 7 of lactation 18 GSM261506 Porcine alveolar macrophages infected with PRRSV VR-2332 (24 hours) 35,369 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa peripheral blood Porcine alveolar macrophages infected with PRRSV (24 hours) 19 GSM261504 Porcine alveolar macrophages infected with PRRSV VR-2332 (12 hours) 32,682 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa peripheral blood Porcine alveolar macrophages infected with PRRSV (12 hours) 20 GSM261505 Porcine alveolar macrphages infected with PRRSV VR-2332 (16 hours) 31,918 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa lung Porcine alveolar macrphages infected with PRRSV (16 hours)