Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(37)		   SAGE RsaI
(0)		   SAGE Sau3A
(2)		   MPSS
(0)		   GeneChip
(5,102)		   Tiling Array
(224)		   cDNA Array
(3,525)		   Oligo Array
(5,950)		   Bead Array
(559)		   Protein Array
(5)		   Antibody
(0)		   RT-PCR
(43)		   HT-Seq
(806)		   Other
(7)		   All
(16,260)		  
  brain
(0)		   blood
(12)		   connective
(0)		   reproductive
(3)		   muscular
(10)		   digestive
(0)		   liver
(0)		   lung
(1)		   urinary
(2)		   endo/exo-crine
(2)		   embryo
(5)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(2)		   all
(37)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM125246 LongSAGE_fetal skeletal muscle_Tongcheng pig_33 dpc 25,738 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle fetal skeletal muscle, 33 dpc, Tongcheng pigs.
2 GSM125250 LongSAGE_fetal skeletal muscle_Landrace pig_65 dpc 24,829 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle fetal skeletal muscle, 65 dpc, Landrace pigs
3 GSM125247 LongSAGE_fetal skeletal muscle_Tongcheng pig_65dpc 24,655 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle fetal skeletal muscle, 65 dpc, Tongcheng pigs
4 GSM125249 LongSAGE_fetal skeletal muscle_Landrace pig_33 dpc 24,408 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle fetal skeletal muscle, 33 dpc, Landrace pigs
5 GSM125251 LongSAGE_fetal skeletal muscle_Landrace pig_90 dpc 22,464 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle fetal skeletal muscle, 90 dpc, Landrace pigs
6 GSM125248 LongSAGE_fetal skeletal muscle_Tongcheng pig_90 dpc 22,035 Chinese Academy of Agricultural Sciences 2006-08-06 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle fetal skeletal muscle, 90 dpc, Tongcheng pigs
7 GSM140699 large white age 9 month 7,665 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
8 GSM140698 large white age 3 month 5,241 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
9 GSM140696 Dunel (Landrace X Duroc) age 3 month 5,158 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
10 GSM140697 Dunel (Landrace X Duroc) age 9 month 4,437 university of trieste 2006-10-18 [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) SAGE Sus scrofa
Sus scrofa domestica		 muscle Muscle development is associated with a modification of mass, composition and function that in productive animals are considered responsible of meat characteristics. In this study, SAGE was employed to describe gene expression in pigs of two commercial lines at the 3 and 9 months og age. The aim was to obtained a full gene expression profile that would assist in identifying genes differentially expressed in the muscle Longissimum dorsi during normal growth. The pattern of expression between lines and ages will help to elucidate the metabolic pathways modulated by these genes during muscle development.
11 GSM261506 Porcine alveolar macrophages infected with PRRSV VR-2332 (24 hours) 35,369 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 peripheral blood Porcine alveolar macrophages infected with PRRSV (24 hours)
12 GSM261504 Porcine alveolar macrophages infected with PRRSV VR-2332 (12 hours) 32,682 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 peripheral blood Porcine alveolar macrophages infected with PRRSV (12 hours)
13 GSM261505 Porcine alveolar macrphages infected with PRRSV VR-2332 (16 hours) 31,918 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 lung Porcine alveolar macrphages infected with PRRSV (16 hours)
14 GSM261503 Porcine alveolar macrophages infected with PRRSV VR-2332 (6 hours) 29,519 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 peripheral blood Porcine alveolar macrophages infected with PRRSV (6 hours)
15 GSM261502 Normal porcine alveolar macrophages 24,355 National Animal Disease Center 2008-01-31 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 peripheral blood Normal porcine alveolar macrophages
16 GSM129478 Day 6 in vitro-produced porcine blastocysts 23,453 USDA-ARS 2006-08-21 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 embryo Porcine Blastocysts (In vitro-produced)
17 GSM129476 Day 6 in vivo-produced porcine blastocysts 20,029 USDA-ARS 2006-08-21 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 embryo Porcine Blastocysts (In vivo-produced)
18 GSM24470 Day 11 pre-implantation embryos 14,464 ANRI 2004-06-01 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 embryo Day 11 Porcine embryos
19 GSM24471 Day 12 pre-implantation embryos 13,098 ANRI 2004-06-01 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 embryo Day 12 Porcine Embryo
20 GSM88536 D11.5 Tubular pre-implantation embryos 12,777 ARS-USDA 2005-12-19 [SAGE NlaIII] SAGE:10:NlaIII:Sus scrofa (GPL1270) SAGE Sus scrofa
Sus scrofa domestica		 embryo D11.5 Tubular pre-implantation embryos
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