Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(903)
  Primates
(2)
  Rodents
(637)
  Mammals
(20)
  Vertebrates
(59)
  Invertebrates
(166)
  Plants
(371)
  Bacteria
(124)
  Viruses
(4)
  Phages
(0)
  Unclassified
(23)
  All
(2,311)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(8)
  Tiling Array
(1)
  cDNA Array
(1)
  Oligo Array
(3)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(6)
  Other
(0)
  All
(20)
 
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Non-coding small RNA profiling by high throughput sequencing of bovine primary retinal microvascular endothelial cells (GSE31340) [HT Sequencing] Illumina Genome Analyzer II (Bos taurus) (GPL11153) Queen's University Belfast 2011-08-11 Bos taurus
Bos taurus
1
(0 x 1)
1 by_platform
by_series
2 Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates (GSE43512) [HT Sequencing] Illumina HiSeq 1000 (Ornithorhynchus anatinus) (GPL16505) University of Oxford 2013-01-15 Ornithorhynchus anatinus
Ornithorhynchus anatinus
3
(0 x 3)
2 1 by_platform
by_series
3 [E-TABM-722] Transcription factor binding evolution in five vertebrates (GSE22078) [HT Sequencing] Illumina Genome Analyzer (Monodelphis domestica) (GPL10475) European Bioinformatics Institute 2010-06-01 Monodelphis domestica
Monodelphis domestica
7
(0 x 7)
7 by_platform
by_series
4 Identifying host pathogenic pathways in bovine digital dermatitis by RNA-Seq analysis of lesions (GSE41732) [HT Sequencing] AB SOLiD 4 System (Bos taurus) (GPL16205) University of Manchester 2012-10-19 Bos taurus
Bos taurus
10
(0 x 10)
10 by_platform
by_series
5 [E-TABM-722] Transcription factor binding evolution in five vertebrates (GSE22078) [HT Sequencing] Illumina Genome Analyzer (Canis lupus familiaris) (GPL10474) European Bioinformatics Institute 2010-06-01 Canis lupus familiaris
Canis lupus familiaris
14
(0 x 14)
14 by_platform
by_series
6 [E-MTAB-445] Transcription profiling by high throughput sequencing of blackface sheep infected with the gastrointestinal helminth Teladorsagia circumcincta to analyse resistance to infection (GSE30606) [HT Sequencing] Illumina Genome Analyzer II (Ovis aries) (GPL13891) European Bioinformatics Institute 2011-07-12 Ovis aries
Ovis aries
15
(0 x 15)
15 by_platform
by_series
7 Regions of XY homology in the pig X chromosome and the boundary of the pseudoautosomal region (GSE40244) [Tiling Array] MMGG Pig X-tiling path 785 BACs v1 (GPL15624) University of Cambridge 2012-08-21 Sus scrofa
Sus scrofa domestica
3,480
(870 x 4)
4 by_platform
by_series
8 Early response of bovine alveolar macrophages to infection with live and heat-killed Mycobacterium bovis (GSE19237) [cDNA Array] Bovine Total Leukocyte cDNA microarray: Fifth generation microarray (GPL5751) The Roslin Institute 2009-12-01 Bos taurus
Bos taurus
124,416
(3,888 x 32)
32 by_platform
by_series
9 Expression data from pig uterus in response to embryos at blastocyst satge and oocytes (GSE33262) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) University of Sheffield 2011-10-26 Sus scrofa
Sus scrofa domestica
144,738
(24,123 x 6)
3 3 by_platform
by_series
10 Expression data from uterine endometrial tissues of Holstein-Friesian cows on days 14-16 after calving (GSE15544) [GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112) Royal Veterinary College 2009-04-03 Bos taurus
Bos taurus
265,408
(24,128 x 11)
11 by_platform
by_series
11 Maternal tract distinguish between spermatozoa and other pathogenic and non-pathogenic entities (GSE34178) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) The University of Sheffield 2011-12-06 Sus scrofa
Sus scrofa domestica
289,476
(24,123 x 12)
3 3 6 by_platform
by_series
12 Granulosa cell gene expression profiling of bovine cohort, dominant and subordinate follicles (GSE2598) [SAGE NlaIII] SAGE:10:NlaIII:Bos taurus (GPL223) University of Glasgow 2005-04-29 Bos taurus
Bos taurus
345,552
(115,184 x 3)
3 by_platform
by_series
13 Neonatal antibotic prophylaxis modulates intestinal immunity and prevents necrotizing enterocolitis in preterm neonates (GSE48125) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Rowett Research Institute 2013-06-19 Sus scrofa
Sus scrofa domestica
385,968
(24,123 x 16)
16 by_platform
by_series
14 Expression data from bovine ovarian theca cells in primary culture (GSE44704) [GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112) University of Reading 2013-02-27 Bos taurus
Bos taurus
386,048
(24,128 x 16)
16 by_platform
by_series
15 Gene expression changes associated with the airway wall response to injury (GSE37086) [Oligo Array] Agilent-022058 R(D)SVS Yahaya_Ovis aries (Sheep) 15K v1.0 (Feature Number version) (GPL15415) The Roslin Institute & R(D)SVS 2012-04-06 Ovis aries
Ovis aries
497,632
(15,551 x 32)
24 8 by_platform
by_series
16 Expression data from canine osteosarcoma stem cells (GSE52063) [GeneChip] [Canine_2] Affymetrix Canine Genome 2.0 Array (GPL3738) Roslin Institute 2013-11-04 Canis lupus familiaris
Canis lupus familiaris
516,420
(43,035 x 12)
8 4 by_platform
by_series
17 Modulation of activation-associated host cell gene expression by the apicomplexan parasite Theileria annulata (GSE36428) [Oligo Array] NimbleGen B. Taurus and T. annulata 385K 080829_B_taurus_JK_EXP (GPL15339) University of Glasgow 2012-03-12 Bos taurus
Bos taurus
619,668
(34,426 x 18)
18 by_platform
by_series
18 A bovine lymphosarcoma cell line infected with Theileria annulata exhibits an irreversible reconfiguration of host cell gene expression (GSE44414) [Oligo Array] 080829_B_taurus_JK_EXP (GPL16696) University of Glasgow 2013-02-19 Bos taurus
Bos taurus
619,668
(34,426 x 18)
18 by_platform
by_series
19 The Impact of Environment on Microbial Diversity and Global Transcriptional Responses in the Developing Pig Gut (GSE15256) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Rowett Research Institute 2009-03-17 Sus scrofa
Sus scrofa domestica
1,302,642
(24,123 x 54)
54 by_platform
by_series
20 Comparative Transcriptional Analysis of Canine and Human Diffuse Large B cell Lymphoma (DLBCL). Molecular Signatures of NF-κB Pathway Activation and Sub-Classification of Canine DLBCL. (GSE30881) [GeneChip] [Canine_2] Affymetrix Canine Genome 2.0 Array (GPL3738) University of Glasgow 2011-07-22 Canis lupus familiaris
Canis lupus familiaris
1,420,155
(43,035 x 33)
33 by_platform
by_series