| 1 |
Genome-wide array comparative genomic hybridization (aCGH) profiling of copy number variations (CNVs) in various dog breeds in comparison to a reference sample (GSE40210) |
[Tiling Array] NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1) (GPL11335) |
Uppsala University |
2012-08-17 |
Canis lupus familiaris
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114,718,871
(2,164,507 x 53)
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43 |
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10 |
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by_platform
by_series |
| 2 |
Copy number variation in the porcine genome (GSE19047) |
[Oligo Array] NimbleGen agrsci porcine 2.1M v1 (GPL9664) |
Aarhus University, Faculty of Agricultural Sciences |
2009-11-16 |
Sus scrofa
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102,881,808
(2,143,371 x 48)
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48 |
by_platform
by_series |
| 3 |
Copy number variation in the bovine genome (GSE18174) |
[Tiling Array] NimbleGen Agrsci Bovine 6.3M v1, Design 3 (GPL9221) |
Aarhus University, Faculty of Agricultural Sciences |
2009-09-18 |
Bos taurus
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82,749,303
(2,121,777 x 39)
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39 |
by_platform
by_series |
| 4 |
Copy number variation in the bovine genome (GSE18174) |
[Tiling Array] NimbleGen Agrsci Bovine 6.3M v1, Design 1 (GPL9219) |
Aarhus University, Faculty of Agricultural Sciences |
2009-09-18 |
Bos taurus
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80,898,808
(2,128,916 x 38)
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38 |
by_platform
by_series |
| 5 |
Copy number variation in the bovine genome (GSE18174) |
[Tiling Array] NimbleGen Agrsci Bovine 6.3M v1, Design 2 (GPL9220) |
Aarhus University, Faculty of Agricultural Sciences |
2009-09-18 |
Bos taurus
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79,342,837
(2,144,401 x 37)
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37 |
by_platform
by_series |
| 6 |
Genome-wide CNVs within and between breeds (GSE26170) |
[Tiling Array] NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1) (GPL11335) |
University of Washington |
2010-12-18 |
Canis lupus familiaris
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23,809,577
(2,164,507 x 11)
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11 |
by_platform
by_series |
| 7 |
Assessment of genome integrity with array CGH of cattle transgenic cell lines produced by homologous recombination and somatic cell cloning (GSE26132) |
[Oligo Array] NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH (GPL11314) |
United States Department of Agriculture |
2010-12-16 |
Bos taurus
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19,498,176
(2,166,464 x 9)
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9 |
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by_platform
by_series |
| 8 |
Analysis of copy number variations among diverse cattle breeds (GSE19866) |
[Oligo Array] NimbleGen Bos taurus Btau31 WG CGH (GPL9865) |
United States Department of Agriculture |
2010-01-12 |
Bos taurus
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17,327,160
(385,048 x 45)
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45 |
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by_platform
by_series |
| 9 |
Analysis of copy number variations among diverse cattle breeds (GSE19866) |
[Oligo Array] NimbleGen Bos taurus Btau40 WG CGH (GPL9866) |
United States Department of Agriculture |
2010-01-12 |
Bos taurus
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17,281,125
(384,025 x 45)
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45 |
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by_platform
by_series |
| 10 |
Identification of Copy Number Variants in Dogs (GSE36333) |
[Oligo Array] Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881 (GPL15316) |
Texas A&M University |
2012-03-07 |
Canis lupus familiaris
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13,028,928
(420,288 x 31)
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1 |
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30 |
by_platform
by_series |
| 11 |
Copy number variation of individual cattle genomes using next-generation sequencing. (GSE31018) |
[Oligo Array] NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH (GPL11314) |
United States Department of Agriculture |
2011-07-28 |
Bos taurus
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10,832,320
(2,166,464 x 5)
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5 |
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by_platform
by_series |
| 12 |
The MTAP-CDKN2A Locus Confers Susceptibility to a Naturally Occurring Canine Cancer (GSE38011) |
[Bead Array] Illumina Infinium 20K Canine SNP Beadchip (GPL15578) |
NHGRI |
2012-05-16 |
Canis lupus familiaris
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10,599,588
(22,362 x 474)
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474 |
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by_platform
by_series |
| 13 |
Genomic and epigenomic analysis of taurine and indicine cattle (GSE41624) |
[Oligo Array] Agilent-025320 Bovine Whole Genome Array 400K 9-8-09 (GPL16182) |
Texas A&M University |
2012-10-16 |
Bos taurus
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10,086,912
(420,288 x 24)
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24 |
by_platform
by_series |
| 14 |
A Snapshot of Copy Number Variation in the pig genome (GSE10753) |
[Oligo Array] Nimblegen 385K pig array CGH (GPL6553) |
Aarhus University, Faculty of Agricultural Sciences |
2008-03-06 |
Sus scrofa
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9,426,672
(392,778 x 24)
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24 |
by_platform
by_series |
| 15 |
Genome-wide CNVs within and between breeds (GSE26170) |
[Oligo Array] NimbleGen Dog 137K 12plex CGH array (090529_CanFam_TN_CGH) (GPL11333) |
University of Washington |
2010-12-18 |
Canis lupus familiaris
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8,763,456
(136,929 x 64)
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64 |
by_platform
by_series |
| 16 |
Comparative Placental Efficiency in Swine Examined Using Expression Profiling (GSE10441) |
[GeneChip] Affymetrix GeneChip Porcine Genome Array probe-level (GPL6472) |
North Carolina State University |
2008-02-07 |
Sus scrofa
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7,969,050
(265,635 x 30)
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30 |
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by_platform
by_series |
| 17 |
An atlas of mRNA expression in pig adipose and muscle tissues (GSE30343) |
[cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) |
Sichuan Agricultural University |
2011-06-30 |
Sus scrofa
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7,848,540
(43,603 x 180)
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108 |
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36 |
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36 |
by_platform
by_series |
| 18 |
Identification of copy number variants in horses (GSE32702) |
[Oligo Array] Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1 (GPL14675) |
Texas A&M University |
2011-10-07 |
Equus caballus
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7,565,184
(420,288 x 18)
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18 |
by_platform
by_series |
| 19 |
Canine CNVs associated with canFam2 segmental duplications (GSE13266) |
[Oligo Array] Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications. (GPL7501) |
University of Washington |
2008-10-17 |
Canis lupus familiaris
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7,342,132
(386,428 x 19)
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19 |
by_platform
by_series |
| 20 |
Gene expression profiles in liver of pigs with extreme high and low levels of androstenone. (GSE11073) |
[cDNA Array] DJF Pig 55K v1 (GPL6173) |
Aarhus University, Faculty of Agricultural Sciences |
2008-04-05 |
Sus scrofa
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6,436,608
(55,488 x 116)
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116 |
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by_platform
by_series |