Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(646)
  Primates
(25)
  Rodents
(337)
  Mammals
(86)
  Vertebrates
(73)
  Invertebrates
(98)
  Plants
(436)
  Bacteria
(122)
  Viruses
(2)
  Phages
(2)
  Unclassified
(20)
  All
(1,853)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(25)
  Tiling Array
(1)
  cDNA Array
(10)
  Oligo Array
(20)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(28)
  Other
(0)
  All
(86)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 CGH analyses for the Chinese indigenous pig breeds and commercial pig breeds (GSE46847) [Oligo Array] NimbleGen Sus scrofa 2.1M CGH array [120529_Sscr_10_2_WG_JH_CGH_HX1] (GPL17150) China Agriculture University 2013-05-11 Sus scrofa
Sus scrofa domestica
26,013,228
(2,167,769 x 12)
12 by_platform
by_series
2 Identification of global copy number variations among diverse pig breeds by a CGH array (GSE41488) [Oligo Array] NimbleGen pig CGH array (GPL16165) Huazhong Agricultural University 2012-10-10 Sus scrofa
Sus scrofa domestica
8,632,032
(719,336 x 12)
12 by_platform
by_series
3 Genome-wide detection by array CGH of copy number variations among diverse horse breeds (GSE52504) [Tiling Array] NimbleGen Horse CGH 3x1.4M Whole-Genome Tiling Array [121114_EquCab2_SW_CGH_UX3] (GPL17952) College of Life Sciences Chinese Inner Mongolia Agricultural University 2013-11-19 Equus caballus
Equus caballus
8,414,754
(1,402,459 x 6)
6 by_platform
by_series
4 An atlas of mRNA expression in pig adipose and muscle tissues (GSE30343) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) Sichuan Agricultural University 2011-06-30 Sus scrofa
Sus scrofa domestica
7,848,540
(43,603 x 180)
108 36 36 by_platform
by_series
5 SNP genotyping analyses for the Chinese indigenous pig breeds and commercial pig breeds (GSE46733) [Bead Array] Illumina Porcine SNP60 BeadChip (WG-410) (GPL11379) China Agriculture University 2013-05-08 Sus scrofa
Sus scrofa domestica
870,282
(62,163 x 14)
14 by_platform
by_series
6 LongSAGE analysis in skeletal muscle at three prenatal stages in lean and obese pig breeds (GSE5494) [SAGE NlaIII] SAGE:17:NlaIII:Sus scrofa (GPL4061) Chinese Academy of Agricultural Sciences 2006-08-10 Sus scrofa
Sus scrofa domestica
653,232
(108,872 x 6)
6 by_platform
by_series
7 Profiles of gene expression in skeletal muscle in sheep from the middle gestation to postnatal stages (GSE23563) [Oligo Array] Agilent-019921 Sheep Gene Expression Microarray (Probe Name version) (GPL10778) Chinese Academy of Agricultural Sciences 2010-08-11 Ovis aries
Ovis aries
602,720
(15,068 x 40)
40 by_platform
by_series
8 Profiling of differentially expressed genes in sheep T lymphocytes response to Haemonchus contortus infection (GSE42302) [Oligo Array] Agilent-028803 Custom Whole Sheep Genome Oligo Microarray (GPL16283) Institute of Preventive Veterinary Medicine 2012-11-15 Ovis aries
Ovis aries
565,825
(43,525 x 13)
13 by_platform
by_series
9 Responses of Monocytes derived macrophages from TB-infected and TB-free cattles to in vitro M.bovis challenge (GSE41401) [Oligo Array] Agilent-023647 B. taurus (Bovine) Oligo Microarray v2 (Probe Name version) (GPL11649) China Agricultural University 2012-10-08 Bos taurus
Bos taurus
524,556
(43,713 x 12)
12 by_platform
by_series
10 Response of swine lung to H1N1 swine influenza virus infection revealed by transcription analysis (GSE28871) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) Unit of Animal Infectious Diseases, National Key Laboratory of Agricultural 2011-04-26 Sus scrofa
Sus scrofa domestica
523,236
(43,603 x 12)
12 by_platform
by_series
11 Transcriptional profiling of swine lung and hilar node after experimental infection with Actinobacillus pleuropneumoniae (GSE42317) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) Sichuan Agricultural University 2012-11-15 Sus scrofa
Sus scrofa domestica
523,236
(43,603 x 12)
6 6 by_platform
by_series
12 Understanding Streptococcus suis serotype 2 infection in pigs through a transcriptional approach (GSE24889) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Huazhong Agricultural University 2010-10-22 Sus scrofa
Sus scrofa domestica
434,214
(24,123 x 18)
6 6 6 by_platform
by_series
13 Expression data from the longuissimus dorsi muscle of Qinchuan cattle, Qinghai yak and Guangxi buffalo at 36 months (GSE19586) [GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112) National Beef Cattle Improvement Center 2009-12-19 Bos taurus
Bos taurus
361,920
(24,128 x 15)
15 by_platform
by_series
14 Long term intake of pea fiber affects the colonic barrier, bacterial and transcriptional profile using pig as model (GSE43917) [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) Sichuan Agricultural University 2013-01-30 Sus scrofa
Sus scrofa domestica
349,304
(43,663 x 8)
8 by_platform
by_series
15 Comparative transcriptome analysis of weaned pigs in response to different dietary starch sources displaying metabolic changes of lipids in liver (GSE20721) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) Sichuan Agricultural University 2010-03-10 Sus scrofa
Sus scrofa domestica
348,824
(43,603 x 8)
8 by_platform
by_series
16 differential gene expression in Sensitive and Resistant Pig to Escherichia coli F18 (GSE26854) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) Yangzhou university 2011-01-25 Sus scrofa
Sus scrofa domestica
348,824
(43,603 x 8)
8 by_platform
by_series
17 Porcine placenta, Erhualian pigs and Large White pigs, gestation day 75 and 90 (GSE11853) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Huazhong Agricultural University 2008-06-22 Sus scrofa
Sus scrofa domestica
289,476
(24,123 x 12)
12 by_platform
by_series
18 Expression data from neonatal pig skeletal muscle (GSE22487) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) southwest university 2010-06-22 Sus scrofa
Sus scrofa domestica
289,476
(24,123 x 12)
12 by_platform
by_series
19 Expression data from longissimus dorsi muscle of Meishan pigs (GSE24689) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Huazhong Agricultural University 2010-10-14 Sus scrofa
Sus scrofa domestica
289,476
(24,123 x 12)
12 by_platform
by_series
20 Modulation of gene expression in heart and liver of hibernating black bears (Ursus americanus) (GSE27875) [cDNA Array] Wistar Institute Ursus americanus 9.6 k BA02 (GPL13263) Shanghai institute for biology science 2011-03-10 Ursus americanus
Ursus americanus
240,000
(9,600 x 25)
13 12 by_platform
by_series
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