Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(4)
  Rodents
(40)
  Mammals
(13)
  Vertebrates
(32)
  Invertebrates
(30)
  Plants
(76)
  Bacteria
(73)
  Viruses
(4)
  Phages
(0)
  Unclassified
(19)
  All
(394)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(1)
  Tiling Array
(0)
  cDNA Array
(3)
  Oligo Array
(8)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(1)
  Other
(0)
  All
(13)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9865 NimbleGen Bos taurus Btau31 WG CGH 385,048 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus
Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau31 WG CGH,
2 GPL9866 NimbleGen Bos taurus Btau40 WG CGH 384,025 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus
Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau40 WG CGH,
3 GPL10155 Agilent-025242 SurePrint G3 Bovine CGH Microarray 4x180K (Feature Number version) 180,880 Agilent Technologies 2010-03-09 Agilent Technologies Bos taurus
Bos taurus
Oligo Array in situ oligonucleotide, Agilent-025242 SurePrint G3 Bovine CGH Microarray 4x180K (Feature Number version), Bovine (bosTau4) CGH Whole Genome Microarray 4x180K Arrays of this design have barcodes that begin with 16025242 or 2525242. Data table annotations based on build bosTau4:Btau_4.0:Oct2007. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
4 GPL10156 Agilent-025522 SurePrint G3 Canine CGH Microarray 4x180K (Feature Number version) 180,880 Agilent Technologies 2010-03-09 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris
Oligo Array in situ oligonucleotide, Agilent-025522 SurePrint G3 Canine CGH Microarray 4x180K (Feature Number version), C. familiaris (Dog) Genome CGH Microarray Rev2, 180K Arrays of this design have barcodes that begin with 16025522 or 2525522. Data table annotations based on build canFam2:v2.0:May2005. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
5 GPL9862 University of Alberta Bovine 24K long oligo array 49,152 National Institute of Agrobiological Sciences 2010-01-08 Oligo design: Bovine Oligo Microarray Consortium; Array preparation: University of Alberta, Agricultural Genomics and Proteomics Unit Bos taurus
Bos taurus
Oligo Array spotted oligonucleotide, University of Alberta Bovine 24K long oligo array, UniGene ID of sequence used to design oligonucleotide probe, Gene symbol, GenBank accession number and gene description were annotated in the GeneSifter based on the UniGene ID. The oligonucleotide sequences are provided as a supplementary file.
6 GPL10248 Agilent 4x44k Horse Gene Expression microarrays (AMADID 021322) 45,220 ETH Zurich 2010-03-24 Agilent Technologies Inc., Santa Clara, USA Equus caballus
Equus caballus
Oligo Array in situ oligonucleotide, Agilent 4x44k Horse Gene Expression microarrays (AMADID 021322),
7 GPL10162 Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) 43,603 Agilent Technologies 2010-03-10 Agilent Sus scrofa
Sus scrofa domestica
cDNA Array spotted DNA/cDNA, Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version),
8 GPL10240 Ovine-Bovine 12K cDNA array 24,288 CSIRO 2010-03-23 CSIRO Australia Bos taurus,Ovis aries
Bos taurus,Ovis aries
cDNA Array spotted DNA/cDNA, Ovine-Bovine 12K cDNA array,
9 GPL10186 [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ] 11,495 INRA 2010-03-16 Affymetrix Bos taurus
Bos taurus
GeneChip in situ oligonucleotide, [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ], This identical to GPL2112 but a custom CDF environment was used to extract data (CDF: Bovine_Bt_REFSEQ). The CDF can be found at the Web link below.
10 GPL10134 NIAS Agilent Bovine 11K Oligo Microarray v1 10,807 National Institute of Agrobiological Sciences 2010-03-04 Agilent Bos taurus
Bos taurus
Oligo Array in situ oligonucleotide, NIAS Agilent Bovine 11K Oligo Microarray v1,
11 GPL10249 Blue-Chip bovine preimplantion embryo specific cDNA array produced by Sirrard et al. 2005 2,255 University of Bonn 2010-03-24 Laval University, Quebec, Canada Bos taurus
Bos taurus
cDNA Array spotted DNA/cDNA, Blue-Chip bovine preimplantion embryo specific cDNA array produced by Sirrard et al. 2005, Submitter was unable to provide further Platform annotations
12 GPL9979 Febit Sus Scrofa miRNA Custom 0.8K 798 Freie Universitaet Berlin 2010-01-26 febit Sus scrofa
Sus scrofa domestica
Oligo Array in situ oligonucleotide, Febit Sus Scrofa miRNA Custom 0.8K, Based on miRDeep predicted porcine miRNAs.
13 GPL9980 Illumina Genome Analyzer II (Myotis ricketti) 0 2010-01-26 Myotis pilosus
Myotis pilosus
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Myotis ricketti),