Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL14112 Agilent-019921 Sheep Gene expression microarray 8x15K, G4813A (Probe Name version) 15,008 University of Florida 2013-03-25 Agilent Ovis aries
Ovis aries		 Oligo Array spotted oligonucleotide, Agilent-019921 Sheep Gene expression microarray 8x15K, G4813A (Probe Name version), Product Number: G4813A Design ID: 019921 Arrays/Slide: 8 microarrays/slide Format: 8 x 15K (One glass slide formatted with eight high-definition 15K arrays) Sequences: 15,208 sheep probes represented (15,008 unique probe sequences)
2 GPL16817 LC Sciences Pig miRNA array LC_MRA-1013_miRPig_16 [miRNA ID version] 284 LC sciences 2013-03-19 LC Sciences Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, LC Sciences Pig miRNA array LC_MRA-1013_miRPig_16 [miRNA ID version], MRA-1013_miRPig_16 (miRNA ID version) Pig miRNA microarray with 100% coverage of unique mature miRNAs listed in miRBase version 16. Reporter BioSequence Type = ss_oligo Reporter BioSequence Polymer Type = DNA
3 GPL16755 Agilent-030687 Oryctolagus cuniculus kyushu_matsuo_custom [Probe Name version] 43,684 Graduate School of Medical Sciences, Kyushu University 2013-03-05 Agilent Technologies Oryctolagus cuniculus
Oryctolagus cuniculus		 Oligo Array in situ oligonucleotide, Agilent-030687 Oryctolagus cuniculus kyushu_matsuo_custom [Probe Name version], Arrays of this design have barcodes that begin with 16030687 or 2530687. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
4 GPL16751 Whole Genome Equine Array 22,176 Texas A&M University 2013-03-05 University of Arizona Equus caballus
Equus caballus		 Oligo Array spotted oligonucleotide, Whole Genome Equine Array,
5 GPL16726 Illumina HiSeq 2000 (Atelerix albiventris) 0 2013-02-26 Atelerix albiventris
Atelerix albiventris		 HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Atelerix albiventris),
6 GPL16709 Agilent-042421 Rabbit BDR version 2 62,976 INRA 2013-02-21 Agilent Technologies Oryctolagus cuniculus
Oryctolagus cuniculus		 Oligo Array in situ oligonucleotide, Agilent-042421 Rabbit BDR version 2, Arrays of this design have barcodes that begin with 16042421 or 2542421. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
7 GPL16569 [SNOWBALLs520824F] Affymetrix Porcine Snowball Array 47,845 Technical University Munich 2013-01-30 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [SNOWBALLs520824F] Affymetrix Porcine Snowball Array,
8 GPL16571 Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) 43,663 Agilent Technologies 2013-01-30 Agilent Technologies Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version), Sus scrofa (Pig) Oligo Microarray v2 Arrays of this design have barcodes that begin with 16026440 or 2526440.
9 GPL16544 Illumina Genome Analyzer II (Myotis ricketti) 0 2013-01-24 Myotis pilosus
Myotis pilosus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Myotis ricketti),
10 GPL16540 Illumina HiSeq 2000 (Canis lupus familiaris) 0 2013-01-23 Canis lupus familiaris
Canis lupus familiaris		 HT Sequencing high-throughput sequencing, Illumina HiSeq 2000 (Canis lupus familiaris),
11 GPL16505 Illumina HiSeq 1000 (Ornithorhynchus anatinus) 0 2013-01-15 Ornithorhynchus anatinus
Ornithorhynchus anatinus		 HT Sequencing high-throughput sequencing, Illumina HiSeq 1000 (Ornithorhynchus anatinus),
12 GPL16493 [PorGene-1_0-st] Porcine Gene 1.0 ST Array [transcript (gene) version] 27,558 Affymetrix, Inc. 2013-01-11 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [PorGene-1_0-st] Porcine Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 11, 2013: annotation table updated with netaffx build 33
13 GPL16500 [BovGene-1_0-st] Bovine Gene 1.0 ST Array [transcript (gene) version] 26,773 Affymetrix, Inc. 2013-01-11 Affymetrix Bos taurus
Bos taurus		 GeneChip in situ oligonucleotide, [BovGene-1_0-st] Bovine Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 11, 2013: annotation table updated with netaffx build 33
14 GPL16482 Agilent-037293 rabbit_BDR [Probe name version] 40,884 INRA 2013-01-09 Agilent Technologies Oryctolagus cuniculus
Oryctolagus cuniculus		 Oligo Array in situ oligonucleotide, Agilent-037293 rabbit_BDR [Probe name version], Array dedicated to rabbit embryo development gene analysis Arrays of this design have barcodes that begin with 16037293 or 2537293. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction probe name. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15 GPL16454 UIUC Cattle 7,872-element cDNA - condensed version 7,871 NCBI/NLM/NIH 2013-01-04 W.M. Keck Center, University of Illinois Urbana-Champaign Bos taurus
Bos taurus		 cDNA Array spotted DNA/cDNA, UIUC Cattle 7,872-element cDNA - condensed version, The 7,872 cDNAs used in this microarray were obtained from normalized and subtracted cattle placenta and spleen cDNA libraries (see Band et al., 2002 Anim. Biotechnol. 13:163-172; Everts et al., 2005 Vet. Immunol. Immunopathol. 105:235-245). Positive controls include beta actin (ACTB), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and hypoxanthine phosphoribosyltransferase (HPRT). Exogenous spiking controls are the soybean genes chlorophyll ab binding protein (CAB), Rubisco small chain 1 (RBS1), and major latex protein (MSG). Negative controls are Cot1 DNA, genomic DNA, spotting buffer, poly-A, and water. All PCR products were printed in duplicate on the array. This is an alternative version of GPL2108. Keywords: cDNA, cow, bovine, microarray
16 GPL16399 Illumina Genome Analyzer IIx (Erinaceus europaeus) 0 2012-12-19 Erinaceus europaeus
Erinaceus europaeus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Erinaceus europaeus),
17 GPL16400 Illumina Genome Analyzer IIx (Felis catus) 0 2012-12-19 Felis catus
Felis catus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Felis catus),
18 GPL16402 Illumina Genome Analyzer IIx (Murina leucogaster) 0 2012-12-19 Murina leucogaster
Murina leucogaster		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Murina leucogaster),
19 GPL16403 Illumina Genome Analyzer IIx (Meles meles) 0 2012-12-19 Meles meles
Meles meles		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Meles meles),
20 GPL16405 Illumina Genome Analyzer IIx (Oryctolagus cuniculus) 0 2012-12-19 Oryctolagus cuniculus
Oryctolagus cuniculus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Oryctolagus cuniculus),
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