Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9980 Illumina Genome Analyzer II (Myotis ricketti) 0 2010-01-26 Myotis pilosus
Myotis pilosus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Myotis ricketti),
2 GPL9979 Febit Sus Scrofa miRNA Custom 0.8K 798 Freie Universitaet Berlin 2010-01-26 febit Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Febit Sus Scrofa miRNA Custom 0.8K, Based on miRDeep predicted porcine miRNAs.
3 GPL9866 NimbleGen Bos taurus Btau40 WG CGH 384,025 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau40 WG CGH,
4 GPL9865 NimbleGen Bos taurus Btau31 WG CGH 385,048 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau31 WG CGH,
5 GPL9862 University of Alberta Bovine 24K long oligo array 49,152 National Institute of Agrobiological Sciences 2010-01-08 Oligo design: Bovine Oligo Microarray Consortium; Array preparation: University of Alberta, Agricultural Genomics and Proteomics Unit Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, University of Alberta Bovine 24K long oligo array, UniGene ID of sequence used to design oligonucleotide probe, Gene symbol, GenBank accession number and gene description were annotated in the GeneSifter based on the UniGene ID. The oligonucleotide sequences are provided as a supplementary file.
6 GPL9774 SR ferret 44K v2.0 43,803 Southern Research Institute 2009-12-09 Agilent Mustela putorius furo
Mustela putorius furo		 Oligo Array in situ oligonucleotide, SR ferret 44K v2.0,
7 GPL9743 UPenn_canine_retinal_EST_4.5k array 3,527 University of Pennsylvania 2009-12-03 W.M. Keck Center for comparative and Functional Genomics, University of Illinois at Urbana-Champaign Canis lupus familiaris
Canis lupus familiaris		 cDNA Array spotted DNA/cDNA, UPenn_canine_retinal_EST_4.5k array, GPL9743 represents two different print sets, v1 and v2. While the order of the clones are not exactly the same in v1 and v2, the clones themselves are identical. The Platform data table reflects a condensed representation of the print sets' replicate features. The v1 and v2 full array layout (.gal) files, representing all of the individual features, are linked below as supplementary files.
8 GPL974 Dog heart cDNA 2,304 Louis Bugnard 2004-02-04 Canis lupus familiaris
Canis lupus familiaris		 cDNA Array spotted DNA/cDNA, Dog heart cDNA, DNA microarray from substractive cDNA library of dog heart Keywords = Heart dog obesity hypertension
9 GPL9724 Febit Homo Sapiens and Sus Scrofa 1.1K miRBase 13.0 1,101 Freie Universitaet Berlin 2009-11-30 febit Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Febit Homo Sapiens and Sus Scrofa 1.1K miRBase 13.0, Based on Sanger miRBase Release 13.0 and deep sequencing data.
10 GPL9712 Agilent-015354 Bovine Oligo Microarray (4x44K) (Probe Name version) 21,536 Agilent Technologies 2009-11-23 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Agilent-015354 Bovine Oligo Microarray (4x44K) (Probe Name version), Design ID: 015354 Agilent has developed a genome-wide bovine microarray to enable scientists to study gene expression profiling at the global level. Agilent's Bovine Oligo – 4X44K microarray covers 21,475 unique genes and transcripts of Bos Taurus, two probes for each gene are produced. Oligonucleotides, 60-mers, are synthesized directly on glass slide using the Agilent’s SurePrint Technology. *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL7053.
11 GPL9710 Operon Pig 14.4K genome microarray v1.0.2 14,353 University of Alberta 2009-11-20 Operon Sus scrofa
Sus scrofa domestica		 Oligo Array spotted oligonucleotide, Operon Pig 14.4K genome microarray v1.0.2,
12 GPL9689 UIUC Bos taurus 13.2K 70-mer oligoarray (condensed) 13,257 Oregon State University 2009-11-17 W.M. Keck Center, University of Illinois Urbana-Champaign Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, UIUC Bos taurus 13.2K 70-mer oligoarray (condensed), The 13,257 oligos used in this microarray were obtained from normalized and subtracted cattle placenta and spleen cDNA libraries and based upon the earlier cDNA array platform GPL2864 (Everts et al., 2005 Vet. Immunol. Immunopathol. 105:235-245) and subtracted cDNA libraries created from embryonic (day 36 and day 64) and extra-embryonic (day 14 to 25) tissues (NCBI libraries 15993,15993, and 17188). Positive controls include beta actin (ACTB), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and hypoxanthine phosphoribosyltransferase (HPRT). Exogenous spiking controls are the soybean genes chlorophyll ab binding protein (CAB), Rubisco small chain 1 (RBS1), and major latex protein (MSG). Negative controls are Cot1 DNA, genomic DNA, spotting buffer, poly-A, and water. All 70-mer oligos were printed in duplicate on the array. Keywords: oligo, cow, placenta, bovine, embryo, microarray
13 GPL9664 NimbleGen agrsci porcine 2.1M v1 2,143,371 Aarhus University, Faculty of Agricultural Sciences 2009-11-12 NimbleGen Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, NimbleGen agrsci porcine 2.1M v1, Annotation in this record based on the porcine pre genome assembly, version 6 native array description files: Sscorfa_U_Aarhus_CB_cgh_HX1.ndf Sscorfa_U_Aarhus_CB_cgh_HX1.pos
14 GPL9461 CASPUR Aristaeus 95K version 1.0 94,928 University of Tuscia 2009-10-19 Combimatrix Corporation Ovis aries
Ovis aries		 Oligo Array in situ oligonucleotide, CASPUR Aristaeus 95K version 1.0, High-density (90k) in situ synthesized microarray for Ovis aries, designed by means of a pipeline of software instruments that, starting from unannotated redundant EST sequences deposited at NCBI, selects oligonucleotides suitable for in situ generation on chip. The chip carries 21,743 non-redundant Ovis aries features in quadruplicate, 73.4% of which are fully annotated and correspond to 10,190 genes, thus representing a good coverage of the sheep genome.
15 GPL9364 Blomberg Lab Pig Pre-implantation Embryo 40K oligo array 45,220 USDA-ARS 2009-10-06 Agilent Technologies Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Blomberg Lab Pig Pre-implantation Embryo 40K oligo array, Agilent-016936 Blomberg Swine porcine embryo Arrays of this design have barcodes that begin with 16016936 or 2516936. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
16 GPL9343 Cow 4K miRNA LC_MRA-1011_miRCow_14 3,968 LC sciences 2009-10-01 LC Sciences Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Cow 4K miRNA LC_MRA-1011_miRCow_14, Cow miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 14
17 GPL9331 Illumina Genome Analyzer (Sarcophilus harrisii) 0 2009-09-30 Sarcophilus harrisii
Sarcophilus harrisii		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Sarcophilus harrisii),
18 GPL9323 Illumina Genome Analyzer (Bos taurus) 0 2009-09-29 Bos taurus
Bos taurus		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Bos taurus),
19 GPL9314 NimbleGen Canis familiaris 385K CanFam2_WG_CGH 389,319 BC Cancer Research Centre 2009-09-29 NimbleGen Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, NimbleGen Canis familiaris 385K CanFam2_WG_CGH, Dog 2.0
20 GPL9284 NIAS Designed Custom Agilent Bovine 15K Oligo DNA Microarray 15,744 National Institute of Agrobiological Sciences 2009-09-24 Agilent Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NIAS Designed Custom Agilent Bovine 15K Oligo DNA Microarray,
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