Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11314 NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH 2,166,464 United States Department of Agriculture 2010-12-14 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus UMD3.0 2.1M WG HD CGH, This array was designed based on Btau_UMD3.0. The Btau_UMD3.1 assembly is identical in almost all respects to UMD3.0. All chromosomes are unchanged. For additional information, see http://www.cbcb.umd.edu/research/bos_taurus_assembly.shtml . The supplementary file 'GPL11314_Btau_4.0.txt' contains the results of LIFTOVER (default setting) to convert the positions of probes from UMD3.0 to Btau_4.0. About 95% (~2,066,000) of the probes were converted successfully.
2 GPL11335 NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1) 2,164,507 University of Washington 2010-12-18 NimbleGen Canis lupus familiaris
Canis lupus familiaris		 Tiling Array in situ oligonucleotide, NimbleGen Dog Whole-Genome CGH 2.1M Tiling Array (CanFam2_CGH_HX1), gw2.1 genome-wide aCGH, with probes spread across the canFam2 genome assembly with 2164507 probes. designfile: CanFam2_CGH_HX1.ndf designname: CanFam2_CGH_HX1 designid: 7995 Genome build: canFam2
3 GPL9220 NimbleGen Agrsci Bovine 6.3M v1, Design 2 2,144,401 Aarhus University, Faculty of Agricultural Sciences 2009-09-17 NimbleGen Bos taurus
Bos taurus		 Tiling Array in situ oligonucleotide, NimbleGen Agrsci Bovine 6.3M v1, Design 2, High density, custom Nimblegen HD2 CGH tiling arrays were planned in 3 designs. Each design covers a specific set of chromosomes with 2.1M probes, which yields 420 bp of average probe spacing (301 bp median probe spacing). Design_ID: 8026 Design_name: 080804_Btau4_design2_CGH_03 Description: HX1 CGH for Bos taurus release 4.0, chr 1,4,6,7,9,13,15,20,22,26,27,M; selection at i300w50. Annotation in this array is based on the bovine genome assembly, version 4.0 (Btau_4.0). Probe sequences are available in the 'PROBE_SEQUENCE' column of the 'GPL9220_080804_Btau4_design2_CGH_HX1.ndf' supplementary file.
4 GPL9664 NimbleGen agrsci porcine 2.1M v1 2,143,371 Aarhus University, Faculty of Agricultural Sciences 2009-11-12 NimbleGen Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, NimbleGen agrsci porcine 2.1M v1, Annotation in this record based on the porcine pre genome assembly, version 6 native array description files: Sscorfa_U_Aarhus_CB_cgh_HX1.ndf Sscorfa_U_Aarhus_CB_cgh_HX1.pos
5 GPL9219 NimbleGen Agrsci Bovine 6.3M v1, Design 1 2,128,916 Aarhus University, Faculty of Agricultural Sciences 2009-09-17 NimbleGen Bos taurus
Bos taurus		 Tiling Array in situ oligonucleotide, NimbleGen Agrsci Bovine 6.3M v1, Design 1, High density, custom Nimblegen HD2 CGH tiling arrays were planned in 3 designs. Each design covers a specific set of chromosomes with 2.1M probes, which yields 420 bp of average probe spacing (301 bp median probe spacing). Design_ID: 8023 Design_name: 080804_Btau4_design1_CGH_03 Description: HX1 CGH for Bos taurus release 4.0, chr 8,12,18,19,21,28,29,U,X; chrU is all chrUn scaffolds concatenated with 10-base run of N's as separator; selection at i200w50. Annotation in this array is based on the bovine genome assembly, version 4.0 (Btau_4.0). Probe sequences are available in the 'PROBE_SEQUENCE' column of the 'GPL9219_080804_Btau4_design1_CGH_HX1.ndf' supplementary file.
6 GPL9221 NimbleGen Agrsci Bovine 6.3M v1, Design 3 2,121,777 Aarhus University, Faculty of Agricultural Sciences 2009-09-17 NimbleGen Bos taurus
Bos taurus		 Tiling Array in situ oligonucleotide, NimbleGen Agrsci Bovine 6.3M v1, Design 3, High density, custom Nimblegen HD2 CGH tiling arrays were planned in 3 designs. Each design covers a specific set of chromosomes with 2.1M probes, which yields 420 bp of average probe spacing (301 bp median probe spacing). Design_ID: 8029 Design_name: 080804_Btau4_design3_CGH_03 Description: HX1 CGH for Bos taurus release 4.0, chr 2,3,5,10,11,14,16,17,23,24,25; selection at i300w50. Annotation in this array is based on the bovine genome assembly, version 4.0 (Btau_4.0). Probe sequences are available in the 'PROBE_SEQUENCE' column of the 'GPL9221_080804_Btau4_design3_CGH_HX1.ndf' supplementary file.
7 GPL6507 Solexa sequencing of small RNAs from short-beaked echidna (18-24 nt) 945,309 Cold Spring Harbor Laboratory 2008-02-19 Illumina Tachyglossus aculeatus
Tachyglossus aculeatus		 HT Sequencing other, Solexa sequencing of small RNAs from short-beaked echidna (18-24 nt),
8 GPL6505 Solexa sequencing of small RNAs from platypus (18-24 nt) 596,512 Cold Spring Harbor Laboratory 2008-02-19 Illumina Ornithorhynchus anatinus
Ornithorhynchus anatinus		 HT Sequencing other, Solexa sequencing of small RNAs from platypus (18-24 nt),
9 GPL6583 MPI_Chen_domestic_dog_Solexa_2007 438,950 MPI molecular genetics 2008-03-14 Canis lupus familiaris
Canis lupus familiaris		 Other other, MPI_Chen_domestic_dog_Solexa_2007,
10 GPL14675 Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1 420,288 Texas A&M University 2011-10-05 Agilent Technologies Equus caballus
Equus caballus		 Oligo Array in situ oligonucleotide, Agilent-027318 Horse_Whole_Genome_equCab2_Exon_Array V1, Arrays of this design have barcodes that begin with 16027318 or 2527318. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
11 GPL15316 Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881 420,288 Texas A&M University 2012-03-06 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-027178 Dog Whole Ensembl Gene Array 2-2-2010 024881, CanFam2.0 Arrays of this design have barcodes that begin with 16027178 or 2527178. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
12 GPL16181 Agilent-024881 Bovine Whole Genome Array 400K 7-31 420,288 Texas A&M University 2012-10-16 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Agilent-024881 Bovine Whole Genome Array 400K 7-31, Array design based on the bosTau4.0 (Baylor 4.0) assembly. Arrays of this design have barcodes that begin with 16024881 or 2524881. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
13 GPL16182 Agilent-025320 Bovine Whole Genome Array 400K 9-8-09 420,288 Texas A&M University 2012-10-16 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, Agilent-025320 Bovine Whole Genome Array 400K 9-8-09, Array design based on the bosTau4.0 (Baylor 4.0) assembly. Arrays of this design have barcodes that begin with 16025320 or 2525320. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
14 GPL16183 Agilent-027266 Bovine CNV Dense Tiling Array V1 2-10-2010 420,288 Texas A&M University 2012-10-16 Agilent Technologies Bos taurus
Bos taurus		 Tiling Array in situ oligonucleotide, Agilent-027266 Bovine CNV Dense Tiling Array V1 2-10-2010, Array design based on the bosTau4.0 (Baylor 4.0) assembly. Arrays of this design have barcodes that begin with 16027266 or 2527266. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15 GPL15186 Bos taurus QTL of female fertility region Tiling Array 385K Nimblegen 392,936 INRA 2012-02-03 Nimblegen Systems Inc. Bos taurus
Bos taurus		 Tiling Array in situ oligonucleotide, Bos taurus QTL of female fertility region Tiling Array 385K Nimblegen, The 385k Fertility Tiling Array was designed in both orientations to cover one of female fertility QTL on chr3. Target regions was gotten from UCSC database on Oct 2007 release (bosTau4). The 385k Fertility Tiling Array contains 171581 forward experimental probes, 171581 reverse experimental probes and 45961 randomly generated probes.
16 GPL6553 Nimblegen 385K pig array CGH 392,778 Aarhus University, Faculty of Agricultural Sciences 2008-03-06 Nimblegen Systems Inc. Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, Nimblegen 385K pig array CGH, The probes on the array covered part of the chromosomes 4, 7, 14 and 17 for the Sus Scrofa preliminary assembly version 3, August 2007. The sequence data were produced by the Sus Scrofa Sequencing Group at the Sanger Institute. Detailed information about probe design is available in the Nimblegen technical note (see Web Link).
17 GPL9130 Sus scrofa Swine Leucocyte Antigen region Tiling Array 385K Nimblegen 392,778 INRA 2009-09-01 Nimblegen Systems Inc. Sus scrofa
Sus scrofa domestica		 Tiling Array in situ oligonucleotide, Sus scrofa Swine Leucocyte Antigen region Tiling Array 385K Nimblegen, The 385k SLA Tiling Array was designed in both orientations to cover the SLA complex. The sequence from olfactory receptor gene OLF42 to BTNL6 on SSC7 p arm that belong to Class I and III regions was gotten from VEGA database on 16 May 2007 release (http://vega.sanger.ac.uk/Sus_scrofa/index.html) including 1,795,000 nt, and the sequence from centromeric sequences to RING1 on SSC7 q arm that belong to Class II region was gotten from VEGA database on 16 May 2007 release and SBAB BACs including 974,684 nt. The tiling array also covered the sequence belonging to centromeric/pericentromeric region and it was gotten from SBAB BACs, which were derived from a Large White boar homozygous for the H01 haplotype including 241,770 nt.
18 GPL9314 NimbleGen Canis familiaris 385K CanFam2_WG_CGH 389,319 BC Cancer Research Centre 2009-09-29 NimbleGen Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, NimbleGen Canis familiaris 385K CanFam2_WG_CGH, Dog 2.0
19 GPL7501 Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications. 386,428 University of Washington 2008-10-17 Nimblegen Canis lupus familiaris
Canis lupus familiaris		 Oligo Array spotted oligonucleotide, Custom Nimblegen aCGH chip targeted to canFam2 segmental duplications., Segmental duplications were computationally identified and then were targeted with 368,360 probes. The remaining available probes were placed in 5kb flanking regions to the segmental duplications (9,278 probes) and in single copy control regions (8,790 probes).
20 GPL9865 NimbleGen Bos taurus Btau31 WG CGH 385,048 United States Department of Agriculture 2010-01-08 NimbleGen Systems, Inc. Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, NimbleGen Bos taurus Btau31 WG CGH,
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