Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1434 10K AgR Bovine Array 10,752 AgResearch 2004-09-02 Bos taurus
Bos taurus		 cDNA Array spotted DNA/cDNA, 10K AgR Bovine Array, This array contains spotted PCR products from our bovine EST collection. Included are housekeeping genes, water blanks (negative PCR) and no DNA blanks (to estimate carryover).
2 GPL4076 11K Ovita Ovine Array print 67 11,520 AgResearch 2006-08-09 Otago Genomics Facility Ovis aries
Ovis aries		 cDNA Array spotted DNA/cDNA, 11K Ovita Ovine Array print 67, This array contains spotted PCR products from an ovine EST collection. Included are housekeeping genes, water blanks (negative PCR) and no DNA blanks (to estimate carryover)
3 GPL4072 11K Ovita Ovine Array print 70 11,520 AgResearch 2006-08-08 Otago Genomics Facility Ovis aries
Ovis aries		 cDNA Array spotted DNA/cDNA, 11K Ovita Ovine Array print 70, This array contains spotted PCR products from an ovine EST collection. Included are housekeeping genes, water blanks (negative PCR) and no DNA blanks (to estimate carryover)
4 GPL4077 20K Ovita Ovine Array print 73 19,968 AgResearch 2006-08-09 Otago Genomics Facility Ovis aries
Ovis aries		 cDNA Array spotted DNA/cDNA, 20K Ovita Ovine Array print 73, This array contains spotted PCR products from an ovine EST collection. Included are housekeeping genes, water blanks (negative PCR) and no DNA blanks (to estimate carryover)
5 GPL1854 24K AgR Bovine Array 24,192 AgResearch 2005-02-06 Bos taurus
Bos taurus		 cDNA Array spotted DNA/cDNA, 24K AgR Bovine Array, This array contains spotted PCR products from our bovine EST collection. Included are housekeeping genes, water blanks (negative PCR) and no DNA blanks (to estimate carryover).
6 GPL11647 454 GS (Equus caballus) 0 2011-01-24 Equus caballus
Equus caballus		 HT Sequencing high-throughput sequencing, 454 GS (Equus caballus),
7 GPL16308 454 GS FLX Titanium (Bos taurus) 0 2012-11-20 Bos taurus
Bos taurus		 HT Sequencing high-throughput sequencing, 454 GS FLX Titanium (Bos taurus),
8 GPL11640 454 GS FLX Titanium (Equus caballus) 0 2011-01-21 Equus caballus
Equus caballus		 HT Sequencing high-throughput sequencing, 454 GS FLX Titanium (Equus caballus),
9 GPL15184 A-UMCU-C44K-1.0 45,220 UMC Utrecht 2012-02-03 Holstege Lab, UMC Utrecht, The Netherlands Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, A-UMCU-C44K-1.0,
10 GPL16205 AB SOLiD 4 System (Bos taurus) 0 2012-10-23 Bos taurus
Bos taurus		 HT Sequencing high-throughput sequencing, AB SOLiD 4 System (Bos taurus),
11 GPL14600 AB SOLiD 4 System (Macropus eugenii) 0 2011-09-21 Macropus eugenii
Macropus eugenii		 HT Sequencing high-throughput sequencing, AB SOLiD 4 System (Macropus eugenii),
12 GPL15696 AB SOLiD System 3.0 (Equus caballus) 0 2012-06-14 Equus caballus
Equus caballus		 HT Sequencing high-throughput sequencing, AB SOLiD System 3.0 (Equus caballus),
13 GPL13811 AB SOLiD System 4 (Macropus eugenii) 0 2011-07-01 Macropus eugenii
Macropus eugenii		 HT Sequencing high-throughput sequencing, AB SOLiD System 4 (Macropus eugenii),
14 GPL6472 Affymetrix GeneChip Porcine Genome Array probe-level 265,635 North Carolina State University 2008-02-07 Affymetrix GeneChip Porcine Genome Array probe-level Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Porcine Genome Array probe-level,
15 GPL8510 AGENAE_CattleGeneric2_9216 9,216 INRA 2009-04-30 CRB GADIE, Jouy-en-Josas, France(crb-gadie@jouy.inra.fr), Plateforme Genomique-Genopole Toulouse Midi Pyrenees(http://genomique.genotoul.fr/) and UMR444 Laboratoire de Genetique Cellulaire, INRA, Castanet-Tolosan, France(gwenola.tosser@toulouse.inra.fr) Bos taurus
Bos taurus		 cDNA Array spotted DNA/cDNA, AGENAE_CattleGeneric2_9216, 9216 bovine cDNA from several libraries were spotted onto a nylon membrane (2.5 X 7.5 cm). The information concerning library name, library Unigene name (http://www.ncbi.nlm.nih.gov/UniGene/lbrowse2.cgi?TAXID=9913), and publication is pated below, for the different libraries. Libraries bcaa (Lib.2819), bcab (Lib.2820), bcac (Lib.2821), bcad (Lib.2822) are described in Smith et al. Genome Res.114:626-630 (2001). Library bcao (Lib. 5505) is described in Sonstegard,T., et al., Mamm Genome 13 (7): 373-379 (2002). Library bcai (Lib. 15979) is described in Degrelle et al., Developmental Biology 288 (2005) 448-460). Library bcas (Lib. 15656) is unpublished Library bcaz (Lib. 17188) has been submitted for publication.
16 GPL3729 AGENAE_PigGeneric2_9216 9,216 INRA 2006-05-04 CRB GADIE Sus scrofa
Sus scrofa domestica		 cDNA Array spotted DNA/cDNA, AGENAE_PigGeneric2_9216, spotted DNA/cDNA
17 GPL10248 Agilent 4x44k Horse Gene Expression microarrays (AMADID 021322) 45,220 Ludwig-Maximilians University of Munich 2010-03-24 Agilent Technologies Inc., Santa Clara, USA Equus caballus
Equus caballus		 Oligo Array in situ oligonucleotide, Agilent 4x44k Horse Gene Expression microarrays (AMADID 021322),
18 GPL7543 Agilent-013807 C. familiaris (Dog) Oligo Microarray G2519A option 004 44,290 Agilent Technologies 2008-10-30 Agilent Technologies Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-013807 C. familiaris (Dog) Oligo Microarray G2519A option 004, C. familiaris Oligo Microarray Arrays of this design have barcodes that begin with 16013807 or 2513807. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
19 GPL11214 Agilent-015067 Canine 4x44K Microarray (Feature Number version) 43,451 Agilent Technologies 2010-11-15 Agilent Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-015067 Canine 4x44K Microarray (Feature Number version), Agilent-015067 015067_D_20060913
20 GPL11351 Agilent-015067 Canine 4x44K Microarray (Probe Name version) 42,034 Agilent Technologies 2010-12-21 Agilent Canis lupus familiaris
Canis lupus familiaris		 Oligo Array in situ oligonucleotide, Agilent-015067 Canine 4x44K Microarray (Probe Name version), Agilent-015067 015067_D_20060913
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