Gene Expression Omnibus (GEO) Overview Version:2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)
  Primates
(206)
  Rodents
(12,612)
  Mammals
(782)
  Vertebrates
(1,156)
  Invertebrates
(4,045)
  Plants
(6,642)
  Bacteria
(2,980)
  Viruses
(50)
  Phages
(4)
  Unclassified
(287)
  All
(47,440)
 
  SAGE NlaIII
(13)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(282)
  Tiling Array
(10)
  cDNA Array
(148)
  Oligo Array
(242)
  Bead Array
(5)
  Protein Array
(1)
  Antibody
(0)
  RT-PCR
(5)
  HT-Seq
(73)
  Other
(2)
  All
(782)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 [E-TABM-722] Transcription factor binding evolution in five vertebrates (GSE22078) [HT Sequencing] Illumina Genome Analyzer (Canis lupus familiaris) (GPL10474) European Bioinformatics Institute 2010-06-01 Canis lupus familiaris
Canis lupus familiaris
14
(0 x 14)
14 by_platform
by_series
2 [E-TABM-722] Transcription factor binding evolution in five vertebrates (GSE22078) [HT Sequencing] Illumina Genome Analyzer (Monodelphis domestica) (GPL10475) European Bioinformatics Institute 2010-06-01 Monodelphis domestica
Monodelphis domestica
7
(0 x 7)
7 by_platform
by_series
3 [E-MTAB-445] Transcription profiling by high throughput sequencing of blackface sheep infected with the gastrointestinal helminth Teladorsagia circumcincta to analyse resistance to infection (GSE30606) [HT Sequencing] Illumina Genome Analyzer II (Ovis aries) (GPL13891) European Bioinformatics Institute 2011-07-12 Ovis aries
Ovis aries
15
(0 x 15)
15 by_platform
by_series
4 Wild dolphin PBL analysis (GSE10617) [cDNA Array] Tursiops truncatus cDNA Microarray version 2.0 (GPL6523) Medical University South Carolina 2008-02-22 Tursiops truncatus
Tursiops truncatus
3,196,368
(21,168 x 151)
151 by_platform
by_series
5 Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro (GSE45439) [HT Sequencing] Illumina Genome Analyzer IIx (Bos taurus) (GPL15750) University College Dublin 2013-03-22 Bos taurus
Bos taurus
14
(0 x 14)
14 by_platform
by_series
6 Whole-transcriptome sequencing of the goat primary mammary epithelial cell line after challenge with Mycoplasma agalactiae (GSE30379) [HT Sequencing] Illumina Genome Analyzer II (Capra hircus) (GPL13814) Aarhus University, Faculty of Agricultural Sciences 2011-07-02 Capra hircus
Capra hircus
12
(0 x 12)
12 by_platform
by_series
7 Whole blood response of Pigs to infection with Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) (GSE41144) [Oligo Array] Swine Protein-Annotated Oligonucleotide Microarray (GPL7435) Michigan State University 2012-09-25 Sus scrofa
Sus scrofa domestica
1,492,992
(20,736 x 72)
72 by_platform
by_series
8 Validation of the Swine Protein-Annotated Oligonucleotide Microarray. (GSE13095) [Oligo Array] Swine Protein-Annotated Oligonucleotide Microarray (GPL7435) Michigan State University 2008-10-07 Sus scrofa
Sus scrofa domestica
331,776
(20,736 x 16)
16 by_platform
by_series
9 Validation of the linear amplification of single bovine embryos (GSE3569) [cDNA Array] Cattle 7,872-element cDNA (GPL2108) University of Connecticut 2005-11-04 Bos taurus
Bos taurus
270,336
(16,896 x 16)
16 by_platform
by_series
10 Unique small RNA signatures uncovered in the tammar wallaby genome [small RNA_seq] (GSE30370) [HT Sequencing] Illumina Genome Analyzer (Macropus eugenii) (GPL13812) University of Connecticut 2011-07-01 Macropus eugenii
Macropus eugenii
8
(0 x 8)
1 1 4 1 1 by_platform
by_series
11 Understanding Streptococcus suis serotype 2 infection in pigs through a transcriptional approach (GSE24889) [GeneChip] [Porcine] Affymetrix Porcine Genome Array (GPL3533) Huazhong Agricultural University 2010-10-22 Sus scrofa
Sus scrofa domestica
434,214
(24,123 x 18)
6 6 6 by_platform
by_series
12 Understanding normal PRRSV infection in lung based on genome-wide transcriptome response identified by deep sequencing (GSE19970) [HT Sequencing] Illumina Genome Analyzer (Sus scrofa) (GPL9126) Sun Yat-sen University 2010-01-20 Sus scrofa
Sus scrofa domestica
3
(0 x 3)
3 by_platform
by_series
13 Transposon-mediated gene regulatory network rewiring contributed to the evolution of pregnancy in mammals (GSE30708) [HT Sequencing] Illumina Genome Analyzer II (Dasypus novemcinctus) (GPL13923) Yale University 2011-07-15 Dasypus novemcinctus
Dasypus novemcinctus
1
(0 x 1)
1 by_platform
by_series
14 Transgenerational gene expression down the male line in pig (GSE32412) [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) University of Bern 2011-09-27 Sus scrofa
Sus scrofa domestica
2,092,944
(43,603 x 48)
16 16 16 by_platform
by_series
15 Transforming growth factor beta signaling in hypertensive remodeling of porcine aorta (GSE7115) [Oligo Array] SBTM Microarray Laboratory Operon Pig v1.0 (GPL4872) Texas A&M University 2007-02-22 Sus scrofa
Sus scrofa domestica
63,912
(10,652 x 6)
6 by_platform
by_series
16 Transcriptomics comparisons of Mac-T cells versus mammary tissue during late pregnancy and peak lactation (GSE46476) [Oligo Array] UIUC Bos taurus 13.2K 70-mer oligoarray (condensed) (GPL8776) Oregon State University 2013-04-29 Bos taurus
Bos taurus
79,542
(13,257 x 6)
6 by_platform
by_series
17 Transcriptomics adaptation of porcine adipose- and bone marrow-derived stem cells during adipogenic and osteogenic differentiation (GSE25854) [Oligo Array] Operon Pig 14.4K genome microarray v1.0.2 (GPL9710) Oregon State University 2010-12-05 Sus scrofa
Sus scrofa domestica
588,473
(14,353 x 41)
35 6 by_platform
by_series
18 Transcriptomic signature in bovine blastocysts resulting from oxidative stress exposure at the time of embryonic genome activation (GSE42281) [Oligo Array] Agilent-028298 Embryogene Bovine 45K microarray (GPL13226) University Laval 2012-11-14 Bos taurus
Bos taurus
700,720
(43,795 x 16)
16 by_platform
by_series
19 Transcriptomic profiling of bovine IVF embryos revealed candidate genes and pathways involved in early embryonic development (GSE24936) [GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112) University of Wisconsin - Madison 2010-10-26 Bos taurus
Bos taurus
144,768
(24,128 x 6)
6 by_platform
by_series
20 Transcriptomic and nuclear architecture of immune cells after LPS-activation (GSE25491) [Oligo Array] SLA/Immune Response/NRSP8 Pig 70 mers Oligonucleotides 3.8K + 13.3K v1 (GPL7151) INRA 2010-11-18 Sus scrofa
Sus scrofa domestica
288,000
(19,200 x 15)
15 by_platform
by_series
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