Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(14)		   Tiling Array
(9)		   cDNA Array
(74)		   Oligo Array
(111)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(76)		   Other
(2)		   All
(295)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16569 [SNOWBALLs520824F] Affymetrix Porcine Snowball Array 47,845 Technical University Munich 2013-01-30 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [SNOWBALLs520824F] Affymetrix Porcine Snowball Array,
2 GPL16493 [PorGene-1_0-st] Porcine Gene 1.0 ST Array [transcript (gene) version] 27,558 Affymetrix, Inc. 2013-01-11 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [PorGene-1_0-st] Porcine Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 11, 2013: annotation table updated with netaffx build 33
3 GPL3533 [Porcine] Affymetrix Porcine Genome Array 24,123 Affymetrix, Inc. 2006-03-09 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [Porcine] Affymetrix Porcine Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Porcine Genome Array provides comprehensive coverage of the Sus scrofa transcriptome. The array contains 23,937 probe sets that interrogate approximately 23,256 transcripts from 20,201 S. scrofa genes. The sequence information for this array was selected from public data sources including UniGene Build 28 (August 2004), GenBank® mRNAs up to August 24, 2004, and GenBank porcine mitochondrial and rRNA sequences. Probe sets consist of up to eleven probe pairs. The array format consists of eleven micron features synthesized on the 100 format. Keywords = high density oligonucleotide array
4 GPL14968 [PIGTEATa520665F] Custom Affymetrix porcine QTL-region-specific microarray [FBN_PigTeat_1.5k v1] 1,587 Leibniz Institute for Farm Animal Biology (FBN) 2011-12-06 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [PIGTEATa520665F] Custom Affymetrix porcine QTL-region-specific microarray [FBN_PigTeat_1.5k v1], [PIGTEATa520665F] Custom Affymetrix porcine QTL-region-specific microarray [FBN_PigTeat_1.5k v1]
5 GPL14969 [PigDrip_miRNA] Custom Affymetrix porcine microRNA array 855 Leibniz Institute for Farm Animal Biology (FBN) 2011-12-06 Affymetrix Sus scrofa
Sus scrofa domestica		 GeneChip in situ oligonucleotide, [PigDrip_miRNA] Custom Affymetrix porcine microRNA array, [PigDrip_miRNA] Custom Affymetrix porcine microRNA array
6 GPL3738 [Canine_2] Affymetrix Canine Genome 2.0 Array 43,035 Affymetrix, Inc. 2006-05-09 Affymetrix Canis lupus familiaris
Canis lupus familiaris		 GeneChip in situ oligonucleotide, [Canine_2] Affymetrix Canine Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Canine Genome 2.0 Array enables researchers to simultaneously interrogate 18,000 C. familiaris mRNA/EST-based transcripts and over 20,000 non-redundant predicted genes. Sequence information for this array includes content from Canis familiaris UniGene Build #11 (April, 2005), GenBank® mRNAs up to April 15, 2005, as well as the BROADD1 gene predictions from the boxer dog genome, downloaded from EBI on May 9, 2005.
7 GPL3979 [Canine] Affymetrix Canine Genome 1.0 Array 23,913 Affymetrix, Inc. 2006-07-06 Affymetrix Canis lupus familiaris
Canis lupus familiaris		 GeneChip in situ oligonucleotide, [Canine] Affymetrix Canine Genome 1.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Array has been discontinued by Affymetrix
8 GPL10941 [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 12, Bovine_Bt_REFSEQ] 10,852 Animal Breeding and Genomics Centre, Wageningen UR Livestock Research 2010-09-17 Affymetrix Bos taurus
Bos taurus		 GeneChip in situ oligonucleotide, [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 12, Bovine_Bt_REFSEQ], This identical to GPL2112 but a custom CDF environment was used to extract data (CDF: Bovine_Bt_REFSEQ). The CDF can be found at the Web link below.
9 GPL10186 [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ] 11,495 Animal Breeding and Genomics Centre, Wageningen UR Livestock Research 2010-03-16 Affymetrix Bos taurus
Bos taurus		 GeneChip in situ oligonucleotide, [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ], This identical to GPL2112 but a custom CDF environment was used to extract data (CDF: Bovine_Bt_REFSEQ). The CDF can be found at the Web link below.
10 GPL13706 [Bovine] Affymetrix Bovine Genome Array [CDF: BovineEndo_Ensembl57_CDF] 20,583 Teagasc 2011-06-09 Affymetrix Bos taurus
Bos taurus		 GeneChip in situ oligonucleotide, [Bovine] Affymetrix Bovine Genome Array [CDF: BovineEndo_Ensembl57_CDF], This identical to GPL2112 but a custom CDF environment was used to extract data (CDF: BovineEndo_Ensembl57).
11 GPL2112 [Bovine] Affymetrix Bovine Genome Array 24,128 Affymetrix, Inc. 2005-05-23 Affymetrix Bos taurus
Bos taurus		 GeneChip in situ oligonucleotide, [Bovine] Affymetrix Bovine Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Bovine Genome Array can be used to study gene expression of over 23,000 bovine transcripts. The array is an ideal tool for researchers studying gene expression profiles in cattle. With the broadest representation of publicly available expressed sequence information, bovine researchers will be able to use this array to monitor genetic mechanisms regulating a variety of preferred traits, such as: - Disease resistance - Meat and dairy production - Stress tolerance The Bovine Genome Array was designed in close collaboration with the Bovine Research Community as part of the Affymetrix GeneChip Consortia Program. Annotations derived from Affymetrix CSV file dated 4/01/2005
12 GPL16500 [BovGene-1_0-st] Bovine Gene 1.0 ST Array [transcript (gene) version] 26,773 Affymetrix, Inc. 2013-01-11 Affymetrix Bos taurus
Bos taurus		 GeneChip in situ oligonucleotide, [BovGene-1_0-st] Bovine Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Jan 11, 2013: annotation table updated with netaffx build 33
13 GPL11445 [Agilent-019442] Agilent/INRA FH Sus scrofa 15K muscle array [Probe Name version] 15,208 INRA 2011-01-13 Agilent Sus scrofa
Sus scrofa domestica		 Oligo Array in situ oligonucleotide, [Agilent-019442] Agilent/INRA FH Sus scrofa 15K muscle array [Probe Name version], A custom repertoire of 15,000 60-mer DNA probes targeting transcripts expressed in growing pig skeletal muscle. This repertoire was print on a multiplex microarray format : 8-plex microarray (eight individual 15K microarrays printed on a single slide)
14 GPL13263 Wistar Institute Ursus americanus 9.6 k BA02 9,600 Shanghai institute for biology science 2011-03-10 Wistar Institute Ursus americanus
Ursus americanus		 cDNA Array spotted DNA/cDNA, Wistar Institute Ursus americanus 9.6 k BA02, All our EST's for the array are submitted to National Center for Biotechnology Information (NCBI), http://www.ncbi.nlm.nih.gov/nucest (GW276093-GW314849)
15 GPL8249 Wistar Institute Ursus americanus 9.6 k BA01 9,600 University of Alaska Fairbanks 2009-03-04 Wistar Institute Ursus americanus
Ursus americanus		 cDNA Array spotted DNA/cDNA, Wistar Institute Ursus americanus 9.6 k BA01, All our EST's for the array are submitted to The Gene Index Project http://compbio.dfci.harvard.edu/tgi/cgi-bin/tgi/gireport.pl?gudb=bear
16 GPL16751 Whole Genome Equine Array 22,176 Texas A&M University 2013-03-05 University of Arizona Equus caballus
Equus caballus		 Oligo Array spotted oligonucleotide, Whole Genome Equine Array,
17 GPL8618 ViaLactia Biosciences custom bovine array 22k version 1b 21,844 DairyNZ 2009-05-31 Agilent Technologies Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, ViaLactia Biosciences custom bovine array 22k version 1b, This array is an early version of the now commercially available Agilent Bos taurus 44k array (Agilent design ID 015354).
18 GPL3711 USDA Bovine 60mer 344k Array (oligo layout) 85,235 USDA 2006-05-01 NimbleGen Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, USDA Bovine 60mer 344k Array (oligo layout), There are 85235 distinct 60mer oligonucleotides on the array representing ~45383 unique bovine sequences/genes (4 identical spots/features for each 60 oligo).
19 GPL3301 USDA Bovine 60mer 344k Array (gene layout) 46,490 USDA 2006-01-04 NimbleGen Bos taurus
Bos taurus		 Oligo Array in situ oligonucleotide, USDA Bovine 60mer 344k Array (gene layout), There are ~ 340,000 features on the array. The 86,191 disinct 60mer oligonucleotides on the array, each represented by 4 features (spots), represent 45,383 unique bovine sequences including 40808 Tentative Consensus sequneces from the TIGR Bos taurus Gene Index (BTGI, release 11.0) and 4,575 singletons from pooled mammary gland and gut library.
20 GPL5451 URH-TALL_Bovine_Operon V1.1_2 19,200 INRA 2007-06-29 GenoToul/Biopuces Bos taurus
Bos taurus		 Oligo Array spotted oligonucleotide, URH-TALL_Bovine_Operon V1.1_2,
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