Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(37)
  SAGE RsaI
(0)
  SAGE Sau3A
(2)
  MPSS
(0)
  GeneChip
(6,782)
  Tiling Array
(313)
  cDNA Array
(3,714)
  Oligo Array
(7,645)
  Bead Array
(1,151)
  Protein Array
(5)
  Antibody
(0)
  RT-PCR
(43)
  HT-Seq
(1,197)
  Other
(79)
  All
(20,968)
 
  brain
(433)
  blood
(4,564)
  connective
(1,424)
  reproductive
(1,396)
  muscular
(2,644)
  digestive
(865)
  liver
(1,746)
  lung
(635)
  urinary
(133)
  endo/exo-crine
(1,124)
  embryo
(877)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(628)
  unclassified
(4,499)
  all
(20,968)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM687457 Stomach-1 60,933 University of Padova 2011-03-09 [Oligo Array] CRIBI pig mRNA expression array [Ensembl (Ver. 56) and UniGene (Ver. 38)] (averaged probe version) (GPL13259) RNA Sus scrofa
Sus scrofa domestica
stomach Stomach. Samples from 3 different pig were extracted and than pooled because pigs were not inbred.
2 GSM687458 Stomach-2 60,933 University of Padova 2011-03-09 [Oligo Array] CRIBI pig mRNA expression array [Ensembl (Ver. 56) and UniGene (Ver. 38)] (averaged probe version) (GPL13259) RNA Sus scrofa
Sus scrofa domestica
stomach Stomach. Samples from 3 different pig were extracted and than pooled because pigs were not inbred.
3 GSM110544 Small intestine, RNA batch 1, Digestive tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica
intestine Small intestine, Digestive tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
4 GSM110554 Large intestine, RNA batch 2, Digestive tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica
intestine Large intestine, Digestive tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
5 GSM110558 Stomach, RNA batch 2, Digestive tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica
stomach Stomach, Digestive tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
6 GSM110566 Large intestine, RNA batch 1, Digestive tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica
intestine Large intestine, Digestive tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
7 GSM110579 Small intestine, RNA batch 2, Digestive tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica
intestine Small intestine, Digestive tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
8 GSM110581 Stomach, RNA batch 1, Digestive tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica
stomach Stomach, Digestive tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
9 GSM1074379 Porcine colon_without fiber_160d_3 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_without fiber_160d
10 GSM1074381 Porcine colon_with fiber_160d_4 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_with fiber_160d
11 GSM1074392 Porcine colon_without fiber_160d_5 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_without fiber_160d
12 GSM1074394 Porcine colon_with fiber_160d_6 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_with fiber_160d
13 GSM1074396 Porcine colon_without fiber_160d_7 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_without fiber_160d
14 GSM1074398 Porcine colon_with fiber_160d_8 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_with fiber_160d
15 GSM1074400 Porcine colon_without fiber_160d_9 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_without fiber_160d
16 GSM1074402 Porcine colon_with fiber_160d_10 43,661 Sichuan Agricultural University 2013-01-30 [Oligo Array] Agilent-026440 Sus scrofa (Pig) Oligo Microarray v2 (Probe Name version) (GPL16571) RNA Sus scrofa
Sus scrofa domestica
colon Colon_with fiber_160d
17 GSM1214758 Pig Sus ileum 001 29,767 Università Cattolica del Sacro Cuore 2013-08-23 [Oligo Array] Customized CombiMatrix Eukaryotic 90K (GPL17616) RNA Sus scrofa
Sus scrofa domestica
intestine Ileum tissue_T0_Standard
18 GSM1214759 Pig Sus ileum 002 29,767 Università Cattolica del Sacro Cuore 2013-08-23 [Oligo Array] Customized CombiMatrix Eukaryotic 90K (GPL17616) RNA Sus scrofa
Sus scrofa domestica
intestine Ileum tissue_T0_Standard
19 GSM1214760 Pig Sus ileum 003 29,767 Università Cattolica del Sacro Cuore 2013-08-23 [Oligo Array] Customized CombiMatrix Eukaryotic 90K (GPL17616) RNA Sus scrofa
Sus scrofa domestica
intestine Ileum tissue_T0_Standard
20 GSM1214761 Pig Sus ileum 004 29,767 Università Cattolica del Sacro Cuore 2013-08-23 [Oligo Array] Customized CombiMatrix Eukaryotic 90K (GPL17616) RNA Sus scrofa
Sus scrofa domestica
intestine Ileum tissue_T0_Standard
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