Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(6,763)

Mammals
(141)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(12)

Tiling Array
(0)

cDNA Array
(54)

Oligo Array
(75)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(141)

reproductive
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(4)

unclassified
(37)

all
(141)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM113324	Madin-Darby bovine kidney epithelial cells BEKC 66693 Control C3	46,490	USDA	2006-06-07	[Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301)	RNA	Bos taurus	kidney	The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), untreated (control, C3) for 24h
2	GSM113328	Madin-Darby bovine kidney epithelial cells BEKC 46496 sodium butyrate treated BT3	46,490	USDA	2006-06-07	[Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301)	RNA	Bos taurus	kidney	The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), butyrate treated (BT treated, BT3)
3	GSM111148	bovine granulosa cell_persistent follicle_reps1-5	8,328	West Virginia University	2006-05-25	[Oligo Array] MSU BLO 8400 (GPL3810)	RNA	Bos taurus	unclassified	source_name:Granulosa cells from day 8 follicles Granulosa cells from day 15 follicles title:bovine granulosa cell_persistent follicle_reps1-5 description:This is all of the array data compiled after normalization.
4	GSM117067	Normal retina vs.Brain pool	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5K_v1.0 (GPL3951)	RNA	Canis lupus familiaris	pooled	Retina Brain pool
5	GSM117088	Retina vs. Brain Pool	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5K_v1.0 (GPL3951)	RNA	Canis lupus familiaris	pooled	Brain pool Retina
6	GSM117163	Frontal lobe_ Gpaez_rep1	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5k_v2 (GPL3957)	RNA	Canis lupus familiaris	cerebrum	Frontal lobe_ Gpaez_rep1
7	GSM117231	Frontal lobe_Gpaez_rep2	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5k_v2 (GPL3957)	RNA	Canis lupus familiaris	cerebrum	RNA extracted from frontal lobe Brain pool
8	GSM117233	Frontal lobe_Gpaez_rep3	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5k_v2 (GPL3957)	RNA	Canis lupus familiaris	cerebrum	Frontal Lobe brain pool
9	GSM117352	Occipital lobe_Gpaez_rep1	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5k_v2 (GPL3957)	RNA	Canis lupus familiaris	cerebrum	Occipital lobe Brain pool
10	GSM117353	Occipital lobe_Gpaez_rep2	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5k_v2 (GPL3957)	RNA	Canis lupus familiaris	cerebrum	Occipital lobe Brain pool
11	GSM117354	Occipital lobe_Gpaez_rep3	9,792	University of Pennsylvania	2006-06-29	[cDNA Array] UPENN_Canis familiaris_4.5k_v2 (GPL3957)	RNA	Canis lupus familiaris	cerebrum	Occipital lobe Brain pool
12	GSM117016	callipyge lamb at 10d, biological rep1	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
13	GSM117017	callipyge lamb at 10d, biological rep 2	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
14	GSM117018	callipyge lamb at 20d, biological rep 1	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
15	GSM117019	callipyge lamb at 20d, biological rep 2	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
16	GSM117020	callipyge lamb at 30d, biological rep 2	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
17	GSM117021	callipyge lamb at 30d, biological rep 1	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
18	GSM117022	normal lamb at 10d, biological rep 1	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
19	GSM117023	normal lamb at 10d, biological rep 2	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.
20	GSM117024	normal lamb at 20d, biological rep 1	24,128	Purdue University	2006-06-29	[GeneChip] [Bovine] Affymetrix Bovine Genome Array (GPL2112)	RNA	Ovis aries	muscle	Gene expression data from callipyge and normal lambs during the onset of muscle hypertrophy phenotype.

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