Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(37)		   SAGE RsaI
(0)		   SAGE Sau3A
(2)		   MPSS
(0)		   GeneChip
(5,399)		   Tiling Array
(224)		   cDNA Array
(3,563)		   Oligo Array
(6,252)		   Bead Array
(559)		   Protein Array
(5)		   Antibody
(0)		   RT-PCR
(43)		   HT-Seq
(838)		   Other
(7)		   All
(16,929)		  
  brain
(312)		   blood
(3,073)		   connective
(1,213)		   reproductive
(1,116)		   muscular
(2,212)		   digestive
(751)		   liver
(1,513)		   lung
(544)		   urinary
(122)		   endo/exo-crine
(1,006)		   embryo
(760)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(595)		   unclassified
(3,712)		   all
(16,929)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM538603 BGA94 273,924 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 kidney kidney
2 GSM538550 BGA23 248,730 USDA-ARS USMARC 2010-04-27 [HT Sequencing] Illumina Genome Analyzer (Bos taurus) (GPL9323) SRA Bos taurus
Bos taurus		 kidney kidney-internal piece
3 GSM458081 Kidney 123,785 Massachusetts Institute of Technology 2009-09-30 [HT Sequencing] Illumina Genome Analyzer (Sarcophilus harrisii) (GPL9331) SRA Sarcophilus harrisii
Sarcophilus harrisii		 kidney Kidney
4 GSM110555 Kidney, RNA batch 1, Kidney tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica		 kidney Kidney, Kidney tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
5 GSM110575 Kidney, RNA batch 2, Kidney tissue, Porcine, 5 Hampshire boars, Healthy, 5 months old 55,488 Aarhus University 2006-05-24 [cDNA Array] DIAS_PIG_55K3_v1 (GPL3608) RNA Sus scrofa
Sus scrofa domestica		 kidney Kidney, Kidney tissue, Porcine, Healthy Reference, Reference tissue, Porcine, Healthy
6 GSM113324 Madin-Darby bovine kidney epithelial cells BEKC 66693 Control C3 46,490 USDA 2006-06-07 [Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301) RNA Bos taurus
Bos taurus		 kidney The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), untreated (control, C3) for 24h
7 GSM113328 Madin-Darby bovine kidney epithelial cells BEKC 46496 sodium butyrate treated BT3 46,490 USDA 2006-06-07 [Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301) RNA Bos taurus
Bos taurus		 kidney The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), butyrate treated (BT treated, BT3)
8 GSM90543 Madin-Darby bovine kidney epithelial cells BEKC 43979 control C2 45,383 USDA 2006-01-04 [Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301) RNA Bos taurus
Bos taurus		 kidney The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), untreated (control) for 24h
9 GSM90544 Madin-Darby bovine kidney epithelial cells BEKC 44371 sodium butyrate treated BT1 45,383 USDA 2006-01-04 [Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301) RNA Bos taurus
Bos taurus		 kidney The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase),treated with 10mM sodium butyrate for 24h
10 GSM90545 Madin-Darby bovine kidney epithelial cells BEKC 46395 sodium butyrate treated BT2 45,383 USDA 2006-01-04 [Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301) RNA Bos taurus
Bos taurus		 kidney The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), treated with 10mM sodium butyrate (BT2) for 24h
11 GSM90546 Madin-Darby bovine kidney epithelial cells BEKC 46404 control C1 45,383 USDA 2006-01-04 [Oligo Array] USDA Bovine 60mer 344k Array (gene layout) (GPL3301) RNA Bos taurus
Bos taurus		 kidney The Madin-Darby bovine kidney epithelial cells, when at approximately 50% confluence (during the exponential phase), untreated (control, C1) for 24h
12 GSM802725 kidney_f2_m_2944 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
13 GSM802726 kidney_f2_f_2949 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
14 GSM802727 kidney_f2_f_2950 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
15 GSM802728 kidney_f2_m_2961 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
16 GSM802729 kidney_f2_m_2962 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
17 GSM802730 kidney_f2_f_2968 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
18 GSM802731 kidney_f2_m_2891 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
19 GSM802732 kidney_f2_f_2897 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
20 GSM802733 kidney_f2_f_2899 43,603 University of Bern 2011-09-28 [cDNA Array] Agilent-020109 Porcine Gene Expression Microarray (44K) (Probe Name version) (GPL10162) RNA Sus scrofa
Sus scrofa domestica		 kidney F2 kidney
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