Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(163)		   Primates
(0)		   Rodents
(45)		   Mammals
(7)		   Vertebrates
(5)		   Invertebrates
(38)		   Plants
(69)		   Bacteria
(57)		   Viruses
(0)		   Phages
(0)		   Unclassified
(17)		   All
(401)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(3)		   Oligo Array
(4)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(7)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL7417 INRA-BDR Bovine 10k 10,368 INRA 2008-10-02 INRA/UMR Biologie du Developpement et Reproduction Bos taurus
Bos taurus		 cDNA Array spotted DNA/cDNA, INRA-BDR Bovine 10k, (22cmx22cm, Amersham Biosciences) - 3x3 pattern - The 10K custom cDNA membrane developed in our laboratory was used for the experiment. Briefly, the array contained 7.800 EST from term placenta (Everts et al., 2005) and we incremented this set by 2.400 new EST from a cDNA library established on young foetuses and early extra-embryonic tissues. This second library (called BE03) was constructed from mRNA isolated from extra-embryonic tissues of bovine embryos from D14 to D24 of gestation and foetuses (D36 and D64). The BE03 library was normalized and subtracted by the 7.8K set using the protocol from Bento Soares. About 10.000 bacterial clones were sequenced. The sequences were repeat-masked using RepeatMasker (05/05/99) and the clustering was performed by CAP3. The CAP3 assembly resulted into 2.400 new EST. In total, 10.214 unique cDNA were spotted onto Nylon N+ membranes (Amersham Biosciences) with a 3x3 pattern (QBot, Proteigene) at the CRB GADIE platform (INRA, Jouy en Josas, France). The “BE03” library is indexed as Lib. 17188 and Lib. 15992 (http://www.ncbi.nlm.nih.gov).
2 GPL8016 MacLeod custom equine cartilage cDNA microarray, Version 2 9,405 University of Kentucky 2008-12-31 W.M. Keck Center, University of Illinois Urbana-Champaign Equus caballus
Equus caballus		 cDNA Array spotted DNA/cDNA, MacLeod custom equine cartilage cDNA microarray, Version 2, The 9,322 cDNAs spotted on this microarray were obtained from a normalized and subtracted cDNA library generated from the total RNA of articular cartilage from a 15-month old equine Thoroughbred gelding. In addition, cDNAs from 28 plasmids used within the lab were spotted; 2 plasmids have been submitted to GenBank. Positive control spots include Elongation Factor Tu (EFTu) and glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Negative control spots are Invitrogen oligos from Arabidopsis thaliana genes CAD1 and GAPC. The original negative control soybean genes chlorophyll ab binding protein (CAB - SPOT_ID: ABbinding) and Rubisco small chain 1 (RBS1 - SPOT_ID: Rubisco) were contaminated prior to spotting with Bos taurus cDNA and thus might show hybridization. Other spots might be identified as empty of buffer. Keywords: cDNA, equine, articular cartilage, microarray
3 GPL7671 Bovine oviduct and endometrium (BOE) 1.7K cDNA array version 1.2 1,728 Ludwig-Maximilians University of Munich 2008-11-19 Laboratory for Functional Genome Analysis (LAFUGA) - Genomics Unit, Gene Center of the LMU Munich, Munich, Germany Bos taurus
Bos taurus		 cDNA Array spotted DNA/cDNA, Bovine oviduct and endometrium (BOE) 1.7K cDNA array version 1.2,
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