Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(808)		   Primates
(6)		   Rodents
(475)		   Mammals
(45)		   Vertebrates
(47)		   Invertebrates
(302)		   Plants
(266)		   Bacteria
(116)		   Viruses
(1)		   Phages
(0)		   Unclassified
(8)		   All
(2,076)		  
  SAGE NlaIII
(4)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(3)		   GeneChip
(51)		   Tiling Array
(81)		   cDNA Array
(27)		   Oligo Array
(63)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(37)		   Other
(0)		   All
(266)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Expression profile of nab2-1 mutant (GSE26303) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) Universidad de Sevilla-CSIC/CABIMER 2010-12-23 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 65,568
(10,928 x 6) 		6 by_platform
by_series
2 Single tip transcriptomics of neighboring hyphae of Aspergillus niger (GSE25497) [GeneChip] [dsmM_ANIGERa_anColl] DSM Aspergillus niger CBS513.88 14k v1 (GPL6758) University of Amsterdam 2010-11-19 Aspergillus niger
Aspergillus niger		 72,770
(14,554 x 5) 		5 by_platform
by_series
3 Revealing the beneficial effect of protease supplementation to high gravity beer fermentations using “–omics” techniques (GSE24645) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) Chalmers University of Technology 2010-10-12 Saccharomyces pastorianus Weihenstephan 34/70
Saccharomyces pastorianus Weihenstephan 34/70		 76,496
(10,928 x 7) 		7 by_platform
by_series
4 cAMP/PKA signaling balances respiratory activity with mitochondria dependent apoptosis via transcriptional regulation (GSE25541) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) University of Kent 2010-11-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 87,424
(10,928 x 8) 		8 by_platform
by_series
5 Differential gene expression in ref6-1 (GSE25444) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Institute of Genetics and Developmental Biology, CAS 2010-11-17 Arabidopsis thaliana
Arabidopsis thaliana		 91,240
(22,810 x 4) 		4 by_platform
by_series
6 Jumonji C domain-containing protein 12 is a Histone H3 Lysine 27 Demethylase (GSE25447) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Institute of Genetics and Developmental Biology, CAS 2010-11-17 Arabidopsis thaliana
Arabidopsis thaliana		 91,240
(22,810 x 4) 		4 by_platform
by_series
7 expression data of WT and ced1 under osmotic stress (GSE25889) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) KAUST 2010-12-07 Arabidopsis thaliana
Arabidopsis thaliana		 91,240
(22,810 x 4) 		4 by_platform
by_series
8 Expression data from Arabidopsis seedlings treated with Pseudomonas aeruginosa (strain PA14) (GSE26084) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Massachusetts General Hosptal & Harvard Medical School 2010-12-15 Arabidopsis thaliana
Arabidopsis thaliana		 91,240
(22,810 x 4) 		4 by_platform
by_series
9 Expression data from Saccharomyces cerevisiae strains deleted for different subunits of the THO/TREX complex (GSE24802) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) CABIMER, Universidad de Sevilla-CSIC 2010-10-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 109,280
(10,928 x 10) 		10 by_platform
by_series
10 Yeast Genomic Expression Patterns in Response to Patulin and Ascorbic acid (GSE26171) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) National Food Rsearch Institute 2010-12-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 131,136
(10,928 x 12) 		12 by_platform
by_series
11 Expression data from Arabidopsis thaliana - Pseudomonas interaction (GSE24552) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Max-Planck-Institute for Molecular Plant Physiology 2010-10-06 Arabidopsis thaliana
Arabidopsis thaliana		 136,860
(22,810 x 6) 		6 by_platform
by_series
12 Expression data from NPA treated stems of Arabidopsis thaliana. (GSE24763) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Gregor Mendel Institute 2010-10-18 Arabidopsis thaliana
Arabidopsis thaliana		 136,860
(22,810 x 6) 		6 by_platform
by_series
13 Expression data of wild-type and dcl1-15 torpedo-staged embryos (GSE24887) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) University of Pennsylvania 2010-10-22 Arabidopsis thaliana
Arabidopsis thaliana		 136,860
(22,810 x 6) 		6 by_platform
by_series
14 GENE-counter, a computational and statistical pipeline for assessing RNA-Seq data for genome-wide expression differences (GSE25818) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Oregon State University 2010-12-02 Arabidopsis thaliana
Arabidopsis thaliana		 136,860
(22,810 x 6) 		6 by_platform
by_series
15 Coordinated activation of cellulose and repression of lignin biosynthesis pathways in rice (GSE26092) [GeneChip] Affymetrix Rice Genome Array (custom CDF) (GPL11322) Virginia Tech 2010-12-15 Oryza sativa Japonica Group
Oryza sativa Japonica Group		 149,628
(37,407 x 4) 		4 by_platform
by_series
16 Understanding the Diversity of Maize Cell Wall (affy_cellwall_maize) (GSE24624) [GeneChip] [Maize] Affymetrix Maize Genome Array (GPL4032) inra 2010-10-12 Zea mays
Zea mays		 177,340
(17,734 x 10) 		10 by_platform
by_series
17 Phytochemical variations in medicinal herbs affecting bioefficacy: Equisetum arvense extracts in the global market place as a case study (GSE24888) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) University of Western Sydney 2010-10-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 196,704
(10,928 x 18) 		18 by_platform
by_series
18 Expression data from dark-grown BR double mutant bzr1-1D;bri1-116, single mutant bri1-116, and wildtype (GSE25134) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Carnegie Institution of Washington 2010-11-04 Arabidopsis thaliana
Arabidopsis thaliana		 205,290
(22,810 x 9) 		9 by_platform
by_series
19 Brassinosteroid (BR) plant hormone signaling (GSE25135) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Carnegie Institution of Washington 2010-11-04 Arabidopsis thaliana
Arabidopsis thaliana		 205,290
(22,810 x 9) 		9 by_platform
by_series
20 Expression data from dark-grown AtGATA2 (At2g45050) overexpression transgenic line, homozygous bri1-116 and Col-0 wild type (GSE25396) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Institute of Botany, CAS 2010-11-15 Arabidopsis thaliana
Arabidopsis thaliana		 205,290
(22,810 x 9) 		9 by_platform
by_series
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