Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,851)		   Primates
(60)		   Rodents
(2,590)		   Mammals
(41)		   Vertebrates
(39)		   Invertebrates
(59)		   Plants
(464)		   Bacteria
(78)		   Viruses
(0)		   Phages
(0)		   Unclassified
(120)		   All
(6,302)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(132)		   Tiling Array
(15)		   cDNA Array
(222)		   Oligo Array
(90)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(464)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(4)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(12)		   flower/sexual organ
(6)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(110)		   all
(132)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM31653 SH100_0H_A 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH100_0H_A description:Wild type Time 0h Replicate A
2 GSM31654 SH100_0H_B 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH100_0H_B description:Wild type Time 0H Replicate B
3 GSM31655 SH100_2H_A 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH100_2H_A description:Wild type Time 2H Replicate A
4 GSM31656 SH100_2H_B 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH100_2H_B description:Wild type Time 2H Replicate B
5 GSM31657 SH100_6H_A 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH100_6H_A description:Wild type Time 6H Replicate A
6 GSM31658 SH100_6H_B 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH100_6H_B description:Wild type Time 6H Replicate B
7 GSM31659 SH121_0H_A 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH121_0H_A description:TOR2 mutant Time 0H Replicate A
8 GSM31660 SH121_0H_B 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH121_0H_B description:TOR2 mutant Time 0H Replicate B
9 GSM31661 SH121_2H_A 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH121_2H_A description:TOR2 mutant Time 2H Replicate A
10 GSM31662 SH121_2H_B 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH121_2H_B description:TOR2 mutant Time 2H Replicate B
11 GSM31663 SH121_6H_A 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH121_6H_A description:TOR2 mutant Time 6H Replicate A
12 GSM31664 SH121_6H_B 9,335 Biozentrum University of Basel 2004-10-01 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Cell title:SH121_6H_B description:TOR2 mutant Time 6H Replicate B
13 GSM34633 tomatidine_15 uM 9,335 Syngenta 2004-11-04 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae S288c title:tomatidine_15 uM description:RNA isolated from Saccharomyces cerevisiae S288c following 5 hours exposure to 15 uM tomatidine (dissolved in the carrier solvent DMF)
14 GSM34634 tomatidine_7.5 uM 9,335 Syngenta 2004-11-04 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae S288c title:tomatidine_7.5 uM description:RNA isolated from Saccharomyces cerevisiae S288c following 5 hours exposure to 7.5 uM tomatidine (dissolved in the carrier solvent DMF)
15 GSM34635 control 9,335 Syngenta 2004-11-04 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae S288c title:control description:RNA isolated from Saccharomyces cerevisiae S288c following 5 hours exposure to solvent DMF
16 GSM34678 YSS37, T=0 9,335 University of Geneva 2004-11-05 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast title:YSS37, T=0 description:Experiment Design: •Type of experiment: time course after GAL (galactose) induction •Experimental factor: time, genotype •Number of hybridizations performed in the experiment: 24 (eight conditions with three biological replicates each) Samples used, extract preparation and labeling: •The origin of the biological sample: Species: S. cerevisiae Cell type: wild-type (YSS37, IFH1-13myc-TRP1, MATa) UASIFH1::HIS3-UASGAL1 (YSS89, UASGAL1-IFH1-13myc-TRP1, MATa) •Growth conditions: log phase (2x107/mL) at 30°C in YPLG medium, then addition of Galactose to 2% •Treatments: all cells were harvested by rapid centrifugation at 4°C then flash frozen in liquid nitrogen. •RNA extraction: RNeasy Protect mini kit (Quiagen) •Labeling protocol(s): cDNA synthesis using Invitrogen reagents according to Affymetrix protocol (5 µg of total RNA) GeneChip IVT labeling kit (Affymetrix) •External controls (spikes): according to the Affymetrix protocols Hybridization controls Poly-A spike controls Keywords = IFH1 Keywords = Transcriptional control of RP genes
17 GSM34679 YSS37, T=30 9,335 University of Geneva 2004-11-05 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast title:YSS37, T=30 description:Experiment Design: •Type of experiment: time course after GAL (galactose) induction •Experimental factor: time, genotype •Number of hybridizations performed in the experiment: 24 (eight conditions with three biological replicates each) Samples used, extract preparation and labeling: •The origin of the biological sample: Species: S. cerevisiae Cell type: wild-type (YSS37, IFH1-13myc-TRP1, MATa) UASIFH1::HIS3-UASGAL1 (YSS89, UASGAL1-IFH1-13myc-TRP1, MATa) •Growth conditions: log phase (2x107/mL) at 30°C in YPLG medium, then addition of Galactose to 2% •Treatments: all cells were harvested by rapid centrifugation at 4°C then flash frozen in liquid nitrogen. •RNA extraction: RNeasy Protect mini kit (Quiagen) •Labeling protocol(s): cDNA synthesis using Invitrogen reagents according to Affymetrix protocol (5 µg of total RNA) GeneChip IVT labeling kit (Affymetrix) •External controls (spikes): according to the Affymetrix protocols Hybridization controls Poly-A spike controls Keywords = IFH1 Keywords = Transcriptional control of RP genes
18 GSM34680 YSS37, T=60 9,335 University of Geneva 2004-11-05 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast title:YSS37, T=60 description:Experiment Design: •Type of experiment: time course after GAL (galactose) induction •Experimental factor: time, genotype •Number of hybridizations performed in the experiment: 24 (eight conditions with three biological replicates each) Samples used, extract preparation and labeling: •The origin of the biological sample: Species: S. cerevisiae Cell type: wild-type (YSS37, IFH1-13myc-TRP1, MATa) UASIFH1::HIS3-UASGAL1 (YSS89, UASGAL1-IFH1-13myc-TRP1, MATa) •Growth conditions: log phase (2x107/mL) at 30°C in YPLG medium, then addition of Galactose to 2% •Treatments: all cells were harvested by rapid centrifugation at 4°C then flash frozen in liquid nitrogen. •RNA extraction: RNeasy Protect mini kit (Quiagen) •Labeling protocol(s): cDNA synthesis using Invitrogen reagents according to Affymetrix protocol (5 µg of total RNA) GeneChip IVT labeling kit (Affymetrix) •External controls (spikes): according to the Affymetrix protocols Hybridization controls Poly-A spike controls Keywords = IFH1 Keywords = Transcriptional control of RP genes
19 GSM34681 YSS37, T=0, b 9,335 University of Geneva 2004-11-05 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast title:YSS37, T=0, b description:Experiment Design: •Type of experiment: time course after GAL (galactose) induction •Experimental factor: time, genotype •Number of hybridizations performed in the experiment: 24 (eight conditions with three biological replicates each) Samples used, extract preparation and labeling: •The origin of the biological sample: Species: S. cerevisiae Cell type: wild-type (YSS37, IFH1-13myc-TRP1, MATa) UASIFH1::HIS3-UASGAL1 (YSS89, UASGAL1-IFH1-13myc-TRP1, MATa) •Growth conditions: log phase (2x107/mL) at 30°C in YPLG medium, then addition of Galactose to 2% •Treatments: all cells were harvested by rapid centrifugation at 4°C then flash frozen in liquid nitrogen. •RNA extraction: RNeasy Protect mini kit (Quiagen) •Labeling protocol(s): cDNA synthesis using Invitrogen reagents according to Affymetrix protocol (5 µg of total RNA) GeneChip IVT labeling kit (Affymetrix) •External controls (spikes): according to the Affymetrix protocols Hybridization controls Poly-A spike controls Keywords = IFH1 Keywords = Transcriptional control of RP genes
20 GSM34682 YSS37, T=30, b 9,335 University of Geneva 2004-11-05 [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast title:YSS37, T=30, b description:Experiment Design: Keywords = IFH1 Keywords = Transcriptional control of RP genes
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