Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(743)		   Primates
(5)		   Rodents
(386)		   Mammals
(31)		   Vertebrates
(51)		   Invertebrates
(187)		   Plants
(209)		   Bacteria
(89)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(1,715)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(65)		   Tiling Array
(15)		   cDNA Array
(20)		   Oligo Array
(56)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(49)		   Other
(0)		   All
(209)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) UCLA 2010-03-31 Arabidopsis thaliana
Arabidopsis thaliana		 3
(0 x 3) 		3 by_platform
by_series
2 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) UCLA 2010-03-31 Arabidopsis thaliana
Arabidopsis thaliana		 1
(0 x 1) 		1 by_platform
by_series
3 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) UCLA 2010-03-31 Oryza sativa
Oryza sativa		 1
(0 x 1) 		1 by_platform
by_series
4 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer (Populus trichocarpa) (GPL10284) UCLA 2010-03-31 Populus trichocarpa
Populus trichocarpa		 1
(0 x 1) 		1 by_platform
by_series
5 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer II (Chlamydomonas reinhardtii) (GPL9100) UCLA 2010-03-31 Chlamydomonas reinhardtii
Chlamydomonas reinhardtii		 1
(0 x 1) 		1 by_platform
by_series
6 Transcriptome changes in soybean seeds resulting from RNAi suppression of seed storage proteins (GSE21116) [HT Sequencing] Illumina Genome Analyzer (Glycine max) (GPL10267) USDA/ARS 2010-03-29 Glycine max
Glycine max		 2
(0 x 2) 		2 by_platform
by_series
7 Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii (GSE21040) [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) Technische Universität München 2010-03-24 Athelia rolfsii
Athelia rolfsii		 109,690
(21,938 x 5) 		5 by_platform
by_series
8 Single-base resolution DNA methylomes of rice and functional roles of DNA methylation (GSE20871) [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) Kunming Insititute of Zoology, Chinese Academy of Sciences,P.R.China 2010-03-13 Oryza sativa
Oryza sativa		 2
(0 x 2) 		2 by_platform
by_series
9 Single-base resolution DNA methylomes of rice and functional roles of DNA methylation (GSE20871) [HT Sequencing] Illumina Genome Analyzer (Oryza nivara) (GPL10245) Kunming Insititute of Zoology, Chinese Academy of Sciences,P.R.China 2010-03-13 Oryza nivara
Oryza nivara		 1
(0 x 1) 		1 by_platform
by_series
10 Single-base resolution DNA methylomes of rice and functional roles of DNA methylation (GSE20871) [HT Sequencing] Illumina Genome Analyzer (Oryza rufipogon) (GPL10246) Kunming Insititute of Zoology, Chinese Academy of Sciences,P.R.China 2010-03-13 Oryza rufipogon
Oryza rufipogon		 1
(0 x 1) 		1 by_platform
by_series
11 The telomere-binding protein Tbf1 demarcates snoRNA gene promoters in Saccharomyces cerevisiae (GSE20870) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) EPFL 2010-03-12 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 2
(0 x 2) 		2 by_platform
by_series
12 Natural selection on cis and trans regulation in yeasts (GSE20749) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) Academia Sinica 2010-03-11 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 24
(0 x 24) 		24 by_platform
by_series
13 DNA Methylation Mediated by a MicroRNA Pathway (GSE20748) [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) National Institute of Biological Sciences, Beijing 2010-03-11 Oryza sativa
Oryza sativa		 7
(0 x 7) 		7 by_platform
by_series
14 High-throughput SuperSAGE for digital gene expression analysis of multiple samples using Next Generation Sequencing (GSE20682) [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) Shinshu University 2010-03-08 Oryza sativa
Oryza sativa		 20
(0 x 20) 		5 9 2 4 by_platform
by_series
15 High-throughput SuperSAGE for digital gene expression analysis of multiple samples using Next Generation Sequencing (GSE20682) [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) Shinshu University 2010-03-08 Arabidopsis thaliana
Arabidopsis thaliana		 6
(0 x 6) 		6 by_platform
by_series
16 small RNAs sequences from grafted Arabidopsis thaliana and Nicotiana benthamiana tissues (GSE20663) [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) University of Cambridge 2010-03-05 Arabidopsis thaliana
Arabidopsis thaliana		 30
(0 x 30) 		22 8 by_platform
by_series
17 MIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana: 454 sequencing (GSE20654) [HT Sequencing] 454 GS FLX (Arabidopsis lyrata) (GPL10142) Donald Danforth Plant Science Center 2010-03-05 Arabidopsis lyrata
Arabidopsis lyrata		 4
(0 x 4) 		2 2 by_platform
by_series
18 MIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana: 454 sequencing (GSE20654) [HT Sequencing] 454 GS FLX (Capsella rubella) (GPL10143) Donald Danforth Plant Science Center 2010-03-05 Capsella rubella
Capsella rubella		 4
(0 x 4) 		3 1 by_platform
by_series
19 MIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana (GSE20662) [HT Sequencing] 454 GS FLX (Arabidopsis lyrata) (GPL10142) Donald Danforth Plant Science Center 2010-03-05 Arabidopsis lyrata
Arabidopsis lyrata		 4
(0 x 4) 		2 2 by_platform
by_series
20 MIRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana (GSE20662) [HT Sequencing] 454 GS FLX (Capsella rubella) (GPL10143) Donald Danforth Plant Science Center 2010-03-05 Capsella rubella
Capsella rubella		 4
(0 x 4) 		3 1 by_platform
by_series
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