Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,728)		   Tiling Array
(707)		   cDNA Array
(1,590)		   Oligo Array
(1,695)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(818)		   Other
(18)		   All
(6,642)		  
1   |   2   |   3   |   4   |   5      »      [41]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [small RNA] (GSE39308) [HT Sequencing] Illumina HiSeq 2000 (Oryza rufipogon) (GPL15800) Zhejiang University 2012-07-12 Oryza rufipogon
Oryza rufipogon		 3
(0 x 3) 		1 2 by_platform
by_series
2 Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication (GSE39309) [HT Sequencing] Illumina HiSeq 2000 (Oryza rufipogon) (GPL15800) Zhejiang University 2012-07-12 Oryza rufipogon
Oryza rufipogon		 3
(0 x 3) 		1 2 by_platform
by_series
3 Bbssk1 dependent gene expression in Beauveria bassiana (GSE40229) [HT Sequencing] Illumina HiSeq 2000 (Beauveria bassiana ARSEF 2860) (GPL15963) Zhejiang University 2012-08-20 Beauveria bassiana ARSEF 2860
Beauveria bassiana ARSEF 2860		 2
(0 x 2) 		2 by_platform
by_series
4 Regulation of root hair development in Arabidopsis thaliana (L.) Heynh. by magnesium is involved in calcium and reactive oxygen species (GSE42899) [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) Zhejiang University 2012-12-13 Arabidopsis thaliana
Arabidopsis thaliana		 2
(0 x 2) 		2 by_platform
by_series
5 Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication [degradome] (GSE39307) [HT Sequencing] Illumina Genome Analyzer (Oryza rufipogon) (GPL10246) Zhejiang University 2012-07-12 Oryza rufipogon
Oryza rufipogon		 1
(0 x 1) 		1 by_platform
by_series
6 Genomic dissection of small RNAs in wild rice (O.rufipogon): lessons for rice domestication (GSE39309) [HT Sequencing] Illumina Genome Analyzer (Oryza rufipogon) (GPL10246) Zhejiang University 2012-07-12 Oryza rufipogon
Oryza rufipogon		 1
(0 x 1) 		1 by_platform
by_series
7 Investigation of the microRNAs in safflower seed, leaf and petal by high-throughput sequencing (GSE25165) [HT Sequencing] Illumina Genome Analyzer (Carthamus tinctorius) (GPL11168) Yellow Sea Fisheries Research Institute (YSFRI), Chinese Academy of Fishery Sciences, Qingdao, 266071, China 2010-11-05 Carthamus tinctorius
Carthamus tinctorius		 3
(0 x 3) 		1 1 1 by_platform
by_series
8 Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis (GSE20534) [HT Sequencing] Illumina Genome Analyzer (Porphyra yezoensis) (GPL10109) Yellow Sea Fisheries Research Institute (YSFRI), Chinese Academy of Fishery Sciences, Qingdao, 266071, China 2010-02-25 Porphyra yezoensis
Porphyra yezoensis		 1
(0 x 1) 		1 by_platform
by_series
9 Genome-wide Ste12-binding site mapping in MATa segregants of YJM789 x S96 cross (GSE19635) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) Yale University 2009-12-23 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 174
(0 x 174) 		174 by_platform
by_series
10 Genetic Analysis of Variation in Transcription Factor Binding in Yeast (GSE19636) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) Yale University 2009-12-23 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 174
(0 x 174) 		174 by_platform
by_series
11 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids (GSE34658) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana		 40
(0 x 40) 		40 by_platform
by_series
12 Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids. (GSE19602) [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) Yale University 2009-12-22 Oryza sativa
Oryza sativa		 24
(0 x 24) 		24 by_platform
by_series
13 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - mRNA-seq (GSE34655) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana		 16
(0 x 16) 		16 by_platform
by_series
14 Epigenetic modifications and their relationships to smRNA and mRNA transcriptomes in maize (GSE15286) [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) Yale University 2009-03-18 Zea mays
Zea mays		 14
(0 x 14) 		7 7 by_platform
by_series
15 Centromere-Like Regions in Budding Yeast (GSE31466) [HT Sequencing] Illumina Genome Analyzer II (Saccharomyces cerevisiae) (GPL9377) Yale University 2011-08-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 13
(0 x 13) 		13 by_platform
by_series
16 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - small RNA-seq (GSE34656) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana		 12
(0 x 12) 		12 by_platform
by_series
17 Genome-wide profiling of DNA methylation in two Arabidopsis ecotypes and their reciprocal hybrids - Bisulfite-seq (GSE34657) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2011-12-22 Arabidopsis thaliana
Arabidopsis thaliana		 12
(0 x 12) 		12 by_platform
by_series
18 High-thoughput Illumina RNA sequencing to identify downstream target genes of RABBIT EARS (RBE) in the flowers of Arabidopsis thaliana (GSE36469) [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) Yale University 2012-03-13 Arabidopsis thaliana
Arabidopsis thaliana		 8
(0 x 8) 		8 by_platform
by_series
19 Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations: RNA-Seq (GSE24970) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2010-10-27 Arabidopsis thaliana
Arabidopsis thaliana		 2
(0 x 2) 		2 by_platform
by_series
20 Genome-wide mapping of the HY5-mediated gene networks in Arabidopsis that involve both transcriptional and post-transcriptional regulations (GSE24974) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Yale University 2010-10-27 Arabidopsis thaliana
Arabidopsis thaliana		 2
(0 x 2) 		2 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [41]
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