Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(92)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(366)
  GeneChip
(31,260)
  Tiling Array
(5,692)
  cDNA Array
(24,724)
  Oligo Array
(35,607)
  Bead Array
(2,290)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(7,427)
  Other
(120)
  All
(107,706)
 
  brain
(4)
  blood
(24)
  connective
(64)
  reproductive
(10)
  muscular
(1)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(24)
  embryo
(30)
  adult aerial structure
(1,222)
  young aerial structure
(694)
  root
(369)
  meristem/growing tissue
(201)
  flower/sexual organ
(596)
  seed/fruit/grain
(267)
  pooled
(506)
  unclassified
(3,415)
  all
(7,427)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1000196 Col_wt 0 BRC 2012-09-10 [HT Sequencing] AB 5500xl Genetic Analyzer (Arabidopsis thaliana) (GPL16033) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:Col_wt title:Col_wt
2 GSM1000197 Col_wt_perox 0 BRC 2012-09-10 [HT Sequencing] AB 5500xl Genetic Analyzer (Arabidopsis thaliana) (GPL16033) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:Col_wt_perox title:Col_wt_perox
3 GSM1000198 HSF 0 BRC 2012-09-10 [HT Sequencing] AB 5500xl Genetic Analyzer (Arabidopsis thaliana) (GPL16033) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:HSF title:HSF
4 GSM1000199 HSF_perox 0 BRC 2012-09-10 [HT Sequencing] AB 5500xl Genetic Analyzer (Arabidopsis thaliana) (GPL16033) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:HSF_perox title:HSF_perox
5 GSM1003340 mutant meristem replicate 1 0 Cold Spring Harbor Laboratory 2012-09-13 [HT Sequencing] Illumina Genome Analyzer IIx (Solanum lycopersicum) (GPL15580) SRA Solanum lycopersicum
Solanum lycopersicum
meristem/growing tissue meristem
6 GSM1003341 mutant meristem replicate 2 0 Cold Spring Harbor Laboratory 2012-09-13 [HT Sequencing] Illumina Genome Analyzer IIx (Solanum lycopersicum) (GPL15580) SRA Solanum lycopersicum
Solanum lycopersicum
meristem/growing tissue meristem
7 GSM1003342 wild type meristem replicate 1 0 Cold Spring Harbor Laboratory 2012-09-13 [HT Sequencing] Illumina Genome Analyzer IIx (Solanum lycopersicum) (GPL15580) SRA Solanum lycopersicum
Solanum lycopersicum
meristem/growing tissue meristem
8 GSM1003343 wild type meristem replicate 2 0 Cold Spring Harbor Laboratory 2012-09-13 [HT Sequencing] Illumina Genome Analyzer IIx (Solanum lycopersicum) (GPL15580) SRA Solanum lycopersicum
Solanum lycopersicum
meristem/growing tissue meristem
9 GSM1004599 ZTW1 RNA-seq 0 College of Life Sciences, Zhejiang University 2012-09-14 [HT Sequencing] Illumina HiSeq 2000 (Saccharomyces cerevisiae) (GPL13821) SRA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Yeast S. cerevisiae strain title:ZTW1 RNA-seq
10 GSM1004600 ZGR3 RNA-seq 0 College of Life Sciences, Zhejiang University 2012-09-14 [HT Sequencing] Illumina HiSeq 2000 (Saccharomyces cerevisiae) (GPL13821) SRA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Yeast S. cerevisiae strain title:ZGR3 RNA-seq
11 GSM1004650 WT H3K27me3_ChIPSeq 0 Chinese Academy of Agricultural Sciences 2012-09-14 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa
young aerial structure Wild type seedling, H3K27me3 ChIP
12 GSM1004651 Epi-df H3K27me3_ChIPSeq 0 Chinese Academy of Agricultural Sciences 2012-09-14 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa
young aerial structure Epi-df seedling, H3K27me3 ChIP
13 GSM1005506 H-CK 0 Huangzhong agricultural university 2012-09-18 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root H_root_ck
14 GSM1005507 H-P1 0 Huangzhong agricultural university 2012-09-18 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root H_root_P1
15 GSM1005508 H-P2 0 Huangzhong agricultural university 2012-09-18 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root H_root_P2
16 GSM1005509 M-CK 0 Huangzhong agricultural university 2012-09-18 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root M_root_ck
17 GSM1005510 M-P1 0 Huangzhong agricultural university 2012-09-18 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root M_root_P1
18 GSM1005511 M-P2 0 Huangzhong agricultural university 2012-09-18 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root M_root_P2
19 GSM1008125 Mid-maturation-stage seed coat 0 University of California, Los Angeles 2012-09-21 [HT Sequencing] Illumina HiSeq 2000 (Glycine max) (GPL15008) SRA Glycine max
Glycine max
other seed/fruit/grain Soybean mid-maturation-stage seed coat
20 GSM1008126 Mid-maturation-stage embryonic cotyledons 0 University of California, Los Angeles 2012-09-21 [HT Sequencing] Illumina HiSeq 2000 (Glycine max) (GPL15008) SRA Glycine max
Glycine max
pooled Soybean mid- maturation-stage embryonic cotyledons
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