Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,432)
  Primates
(665)
  Rodents
(7,826)
  Mammals
(399)
  Vertebrates
(731)
  Invertebrates
(1,567)
  Plants
(3,435)
  Bacteria
(998)
  Viruses
(14)
  Phages
(0)
  Unclassified
(76)
  All
(33,163)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(806)
  Tiling Array
(260)
  cDNA Array
(1,292)
  Oligo Array
(981)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(90)
  Other
(0)
  All
(3,435)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(7)
  young aerial structure
(2)
  root
(1)
  meristem/growing tissue
(24)
  flower/sexual organ
(27)
  seed/fruit/grain
(1)
  pooled
(6)
  unclassified
(22)
  all
(90)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM402423 Wild type 4,453,247 UCLA 2009-05-12 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana
leaf leaves
2 GSM402424 atxr5/atxr6 double mutant 4,428,453 UCLA 2009-05-12 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana
leaf leaves
3 GSM410805 The Physcomitrella Degradome 2,784,945 Pennsylvania State University 2009-06-01 [HT Sequencing] AB SOLiD System 2.0 (Physcomitrella patens) (GPL9393) SRA Physcomitrella patens
Physcomitrella patens
pooled Wild-type protonemata, 10-day old
4 GSM415786 Col-0 sRNAs (SL4_2) 769,099 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total aerial title:Col-0 sRNAs (SL4_2) description:small RNA sequencing Total sRNA sample raw data file: SL4_2.fq (fastq file)
5 GSM415798 Col-2 sRNAs (SL24_1) 734,217 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total floral title:Col-2 sRNAs (SL24_1) description:small RNA sequencing Total sRNA sample; biological replicate with SL25 and technical replicates SL23_1 and SL23_2 raw data file: SL24_1.fq (fastq file)
6 GSM415799 ago4-3 sRNAs (SL25_1) 491,053 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total floral title:ago4-3 sRNAs (SL25_1) description:small RNA sequencing Total sRNA sample raw data file: SL25_1.fq (fastq file)
7 GSM406301 Tae small RNA 474,354 caas 2009-05-20 [HT Sequencing] Illumina Genome Analyzer II (Triticum aestivum) (GPL9328) SRA Triticum aestivum
Triticum aestivum
pooled root, shoot, leaf, young spike
8 GSM406303 BdV small RNA 383,223 caas 2009-05-20 [HT Sequencing] Illumina Genome Analyzer II (Brachypodium distachyon) (GPL9329) SRA Brachypodium distachyon
Brachypodium distachyon
pooled root, shoot, leaf (vegetative)
9 GSM415789 FLAG AGO6 associated sRNAs (SL9) 359,711 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP floral title:FLAG AGO6 associated sRNAs (SL9) description:small RNA sequencing IP with FLAG Antibody raw data file: SL9.fa (fasta file)
10 GSM415790 FLAG AGO6 associated sRNAs (SL10) 353,572 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP floral title:FLAG AGO6 associated sRNAs (SL10) description:small RNA sequencing IP with FLAG Antibody raw data file: SL10.fq (fastq file)
11 GSM406302 BdR small RNA 306,353 caas 2009-05-20 [HT Sequencing] Illumina Genome Analyzer II (Brachypodium distachyon) (GPL9329) SRA Brachypodium distachyon
Brachypodium distachyon
other flower/sexual organ young spike (reproductive)
12 GSM415792 antiAGO9 associated sRNAs (SL12) 281,718 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP aerial title:antiAGO9 associated sRNAs (SL12) description:small RNA sequencing IP with endogenous AGO9 Antibody raw data file: SL12.fa (fasta file)
13 GSM415797 ago4-3 AGO4P:AGO4 D660A sRNAs (SL235H) 279,573 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total floral title:ago4-3 AGO4P:AGO4 D660A sRNAs (SL235H) description:small RNA sequencing Total sRNA sample raw data file: SL235_BH.fq (fastq file)
14 GSM415795 AGO4 Promoter:FLAG AGO9 associated sRNAs (SL234F) 270,648 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP floral title:AGO4 Promoter:FLAG AGO9 associated sRNAs (SL234F) description:small RNA sequencing IP with FLAG Antibody raw data file: SL234_BCF.fq (fastq file)
15 GSM415796 drd3-1 sRNAs (SL235B) 267,638 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total floral title:drd3-1 sRNAs (SL235B) description:small RNA sequencing Total sRNA sample raw data file: SL235_BH.fq (fastq file)
16 GSM415784 Col-0 sRNAs (SL23_2) 233,229 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total floral title:Col-0 sRNAs (SL23_2) description:small RNA sequencing Total sRNA sample; technical rep with SL23_1; biological replicate with SL5 and SL24_1 raw data file: SL23_2.fq (fastq file)
17 GSM415791 antiAGO9 associated sRNAs (SL11) 231,171 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP aerial title:antiAGO9 associated sRNAs (SL11) description:small RNA sequencing IP with endogenous AGO9 Antibody raw data file: SL11.fa (fasta file)
18 GSM415793 AGO4 Promoter:FLAG AGO4 associated sRNAs (SL234B) 201,780 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP floral title:AGO4 Promoter:FLAG AGO4 associated sRNAs (SL234B) description:small RNA sequencing IP with FLAG Antibody raw data file: SL234_BCF.fq (fastq file)
19 GSM415785 Col-0 sRNAs (SL5) 194,962 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:total floral title:Col-0 sRNAs (SL5) description:small RNA sequencing Total sRNA sample; biological replicate with SL24_1 and technical replicates SL23_1 and SL23_2 raw data file: SL5.fq (fastq file)
20 GSM415794 AGO4 Promoter:FLAG AGO6 associated sRNAs (SL234C) 140,763 University of Cambridge 2009-06-10 [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) SRA Arabidopsis thaliana
Arabidopsis thaliana
unclassified source_name:IP floral title:AGO4 Promoter:FLAG AGO6 associated sRNAs (SL234C) description:small RNA sequencing IP with FLAG Antibody raw data file: SL234_BCF.fq (fastq file)
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