Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(17,356)

Invertebrates
(1,567)

Plants
(3,435)

Phages
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(90)

Other
(0)

All
(3,435)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(7)

young aerial structure
(2)

root
(1)

meristem/growing tissue
(24)

flower/sexual organ
(27)

seed/fruit/grain
(1)

pooled
(6)

unclassified
(22)

all
(90)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM418173	BM_14day_seedling	26,394	Iowa State University	2009-06-17	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	young aerial structure	above_ground_seedling
2	GSM418174	MB_14day_seedling	26,394	Iowa State University	2009-06-17	[HT Sequencing] Illumina Genome Analyzer II (Zea mays) (GPL9361)	SRA	Zea mays	young aerial structure	above_ground_seedling
3	GSM420173	mop1/mop1-SAM	24,743	Iowa State University	2009-06-23	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
4	GSM420174	Mop1/mop1-SAM	24,743	Iowa State University	2009-06-23	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
5	GSM422828	Maize-SAM-L1	21,602	Iowa State University	2009-06-27	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
6	GSM422829	Maize-SAM-L2	21,602	Iowa State University	2009-06-27	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	meristem/growing tissue	Shoot apical meristem
7	GSM406301	Tae small RNA	474,354	caas	2009-05-20	[HT Sequencing] Illumina Genome Analyzer II (Triticum aestivum) (GPL9328)	SRA	Triticum aestivum	pooled	root, shoot, leaf, young spike
8	GSM410805	The Physcomitrella Degradome	2,784,945	Pennsylvania State University	2009-06-01	[HT Sequencing] AB SOLiD System 2.0 (Physcomitrella patens) (GPL9393)	SRA	Physcomitrella patens	pooled	Wild-type protonemata, 10-day old
9	GSM409319	Endogenous small RNAs from developing inflorescence of rice - replicate 1	101,880	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	other flower/sexual organ	Endogenous small RNAs from developing inflorescence of rice - replicate 1
10	GSM407072	Endogenous small RNAs from rice - Run2	88,508	University of California Davis	2009-05-22	[HT Sequencing] Preliminary exploration of Oryza sativa small RNAs - Run 1 and 2 (GPL8587)	other	Oryza sativa	unclassified	source_name:Run2 title:Endogenous small RNAs from rice - Run2 description:18-34nt small RNAs
11	GSM409321	Endogenous small RNAs from developing inflorescence of rice - replicate 3	80,071	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	other flower/sexual organ	Endogenous small RNAs from developing inflorescence of rice - replicate 3
12	GSM409318	Endogenous small RNAs from shoot apex of rice - replicate 3	78,808	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	meristem/growing tissue	Endogenous small RNAs from shoot apex of rice - replicate 3
13	GSM409313	Endogenous small RNAs from root apex of rice - replicate 1	73,710	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	meristem/growing tissue	Endogenous small RNAs from root apex of rice - replicate 1
14	GSM409315	Endogenous small RNAs from root apex of rice - replicate 3	59,760	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	meristem/growing tissue	Endogenous small RNAs from root apex of rice - replicate 3
15	GSM409316	Endogenous small RNAs from shoot apex of rice - replicate 1	57,351	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	meristem/growing tissue	Endogenous small RNAs from shoot apex of rice - replicate 1
16	GSM409320	Endogenous small RNAs from developing inflorescence of rice - replicate 2	56,335	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	other flower/sexual organ	Endogenous small RNAs from developing inflorescence of rice - replicate 2
17	GSM409317	Endogenous small RNAs from shoot apex of rice - replicate 2	51,421	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	meristem/growing tissue	Endogenous small RNAs from shoot apex of rice - replicate 2
18	GSM409322	Endogenous small RNAs from mature leaf of rice - replicate 1	40,372	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	leaf	Leaf1
19	GSM409324	Endogenous small RNAs from mature leaf of rice - replicate 3	38,546	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	leaf	Leaf3
20	GSM409314	Endogenous small RNAs from root apex of rice - replicate 2	22,709	University of California Davis	2009-05-27	[HT Sequencing] 454 GS (Oryza sativa) (GPL9388)	SRA	Oryza sativa	meristem/growing tissue	Endogenous small RNAs from root apex of rice - replicate 2

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