Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(21,093)

Invertebrates
(1,378)

Plants
(2,849)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(358)

Other
(0)

All
(2,849)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(17)

young aerial structure
(21)

root
(22)

meristem/growing tissue
(17)

flower/sexual organ
(17)

seed/fruit/grain
(6)

pooled
(17)

unclassified
(241)

all
(358)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM521934	Yeast_Untagged_control	0	EPFL	2010-03-12	[HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134)	SRA	Saccharomyces cerevisiae	pooled	whole organism, untagged
2	GSM521935	Yeast_Tbf1_Chip_seq	0	EPFL	2010-03-12	[HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134)	SRA	Saccharomyces cerevisiae	pooled	whole organism, tagged
3	GSM509289	wt_siRNA	3,121,278	University of Edinburgh	2010-02-15	[HT Sequencing] Illumina Genome Analyzer II (Schizosaccharomyces pombe) (GPL9453)	SRA	Schizosaccharomyces pombe	unclassified	source_name:wt_siRNA title:wt_siRNA
4	GSM518468	wt/wt	0	University of Cambridge	2010-03-05	[HT Sequencing] Illumina Genome Analyzer (Nicotiana benthamiana) (GPL10144)	SRA	Nicotiana benthamiana	meristem/growing tissue	shoot total RNA
5	GSM518469	wt/GxGF-IR	0	University of Cambridge	2010-03-05	[HT Sequencing] Illumina Genome Analyzer (Nicotiana benthamiana) (GPL10144)	SRA	Nicotiana benthamiana	meristem/growing tissue	shoot total RNA
6	GSM528201	Wild type soybean seed	0	USDA/ARS	2010-03-29	[HT Sequencing] Illumina Genome Analyzer (Glycine max) (GPL10267)	SRA	Glycine max	other seed/fruit/grain	Seed
7	GSM518290	wild type rice (cv. Sasanishiki) leaf	71,640	Shinshu University	2010-03-05	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	leaf	rice mature leaf
8	GSM492814	wild type + ago1D580A	0	Gene Center, University of Munich	2010-01-04	[HT Sequencing] Illumina Genome Analyzer (Schizosaccharomyces pombe) (GPL9854)	SRA	Schizosaccharomyces pombe	unclassified	source_name:mutant S. pombe title:wild type + ago1D580A description:small RNA profiling (by high-throughput sequencing) in wild type S. pombe cells and in 12 mutant cells
9	GSM492813	wild type	0	Gene Center, University of Munich	2010-01-04	[HT Sequencing] Illumina Genome Analyzer (Schizosaccharomyces pombe) (GPL9854)	SRA	Schizosaccharomyces pombe	unclassified	source_name:wildtype S. pombe title:wild type description:small RNA profiling (by high-throughput sequencing) in wild type S. pombe cells and in 12 mutant cells
10	GSM497277	Volvox_carteri_RNA-Seq	0	University of California at Berkeley	2010-01-14	[HT Sequencing] Illumina Genome Analyzer II (Volvox carteri) (GPL9922)	SRA	Volvox carteri	unclassified	source_name:Mature colonies title:Volvox_carteri_RNA-Seq description:RNA sequencing
11	GSM497276	Volvox_carteri_BS-Seq	0	University of California at Berkeley	2010-01-14	[HT Sequencing] Illumina Genome Analyzer II (Volvox carteri) (GPL9922)	SRA	Volvox carteri	unclassified	source_name:Mature colonies title:Volvox_carteri_BS-Seq description:Bisulfite sequencing
12	GSM497275	Uncinocarpus_reesi_RNA-Seq	0	University of California at Berkeley	2010-01-14	[HT Sequencing] Illumina Genome Analyzer II (Uncinocarpus reesii) (GPL9921)	SRA	Uncinocarpus reesii	pooled	Mycelium
13	GSM497274	Uncinocarpus_reesi_BS-Seq	0	University of California at Berkeley	2010-01-14	[HT Sequencing] Illumina Genome Analyzer II (Uncinocarpus reesii) (GPL9921)	SRA	Uncinocarpus reesii	pooled	Mycelium
14	GSM512879	thaliana_inflorescence_rep2	0	Pennsylvania State University	2010-02-22	[HT Sequencing] AB SOLiD System 3.0 (Arabidopsis thaliana) (GPL10088)	SRA	Arabidopsis thaliana	other flower/sexual organ	inflorescences
15	GSM512878	thaliana_inflorescence_rep1	0	Pennsylvania State University	2010-02-22	[HT Sequencing] AB SOLiD System 3.0 (Arabidopsis thaliana) (GPL10088)	SRA	Arabidopsis thaliana	other flower/sexual organ	inflorescences
16	GSM492823	swi6ÃŽâ€	0	Gene Center, University of Munich	2010-01-04	[HT Sequencing] Illumina Genome Analyzer (Schizosaccharomyces pombe) (GPL9854)	SRA	Schizosaccharomyces pombe	unclassified	source_name:mutant S. pombe title:swi6ÃŽâ€ description:small RNA profiling (by high-throughput sequencing) in wild type S. pombe cells and in 12 mutant cells
17	GSM528202	SP- soybean seed	0	USDA/ARS	2010-03-29	[HT Sequencing] Illumina Genome Analyzer (Glycine max) (GPL10267)	SRA	Glycine max	other seed/fruit/grain	Seed
18	GSM521246	Solid_culture_ER_stress_RNA-Seq rep 2	0	Beijing Genomics Institute at Shenzhen	2010-03-11	[HT Sequencing] Illumina Genome Analyzer (Aspergillus oryzae) (GPL9518)	SRA	Aspergillus oryzae	unclassified	source_name:cell under ER stress in solid culture title:Solid_culture_ER_stress_RNA-Seq rep 2 description:sample for paired-end library with insert size of 200 bp which generates 44 bp paired-end reads
19	GSM521244	Solid_culture_control_RNA-Seq rep 2	0	Beijing Genomics Institute at Shenzhen	2010-03-11	[HT Sequencing] Illumina Genome Analyzer (Aspergillus oryzae) (GPL9518)	SRA	Aspergillus oryzae	unclassified	source_name:cell in solid culture title:Solid_culture_control_RNA-Seq rep 2 description:sample for paired-end library with insert size of 200 bp which generates 44 bp paired-end reads
20	GSM512645	smallRNA_Flowers 2	0	Pennsylvania State University	2010-02-22	[HT Sequencing] AB SOLiD System 3.0 (Arabidopsis lyrata) (GPL10082)	SRA	Arabidopsis lyrata	other flower/sexual organ	flowering tissues

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