Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(92)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(366)
  GeneChip
(31,260)
  Tiling Array
(5,692)
  cDNA Array
(24,724)
  Oligo Array
(35,607)
  Bead Array
(2,290)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(7,427)
  Other
(120)
  All
(107,706)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(369)
  meristem/growing tissue
(201)
  flower/sexual organ
(596)
  seed/fruit/grain
(267)
  pooled
(0)
  unclassified
(0)
  all
(7,427)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1008125 Mid-maturation-stage seed coat 0 University of California, Los Angeles 2012-09-21 [HT Sequencing] Illumina HiSeq 2000 (Glycine max) (GPL15008) SRA Glycine max
Glycine max
other seed/fruit/grain Soybean mid-maturation-stage seed coat
2 GSM1021004 Small RNAs in pepper (Fruit1 samples) 0 Seoul National University 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper fruit
3 GSM1021005 Small RNAs in pepper (Fruit2 samples) 0 Seoul National University 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper fruit
4 GSM1021007 Small RNAs in pepper (Fruit4 samples) 0 Seoul National University 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper fruit
5 GSM1021008 Small RNAs in pepper (FruitB samples) 0 Seoul National University 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper fruit
6 GSM1021009 Small RNAs in pepper (FruitB+5 samples) 0 Seoul National University 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper fruit
7 GSM1021010 Small RNAs in pepper (FruitB+10 samples) 0 Seoul National University 2012-10-17 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper fruit
8 GSM1023628 Mid-maturation-stage embryonic axis 0 University of California, Los Angeles 2012-10-22 [HT Sequencing] Illumina HiSeq 2000 (Glycine max) (GPL15008) SRA Glycine max
Glycine max
embryo Soybean mid-maturation-stage embryonic axis part
9 GSM1035300 29CHIP_IPsample 0 University of Delhi, South Campus 2012-11-09 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa
other seed/fruit/grain Seed
10 GSM1035301 29CHIP_Input 0 University of Delhi, South Campus 2012-11-09 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa
other seed/fruit/grain Seed
11 GSM1035302 29CHIP_mock 0 University of Delhi, South Campus 2012-11-09 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa
other seed/fruit/grain Seed
12 GSM1035792 Small RNAs in pepper (Fruit3 samples) by high-throughput sequencing 0 Seoul National University 2012-11-12 [HT Sequencing] Illumina HiSeq 2000 (Capsicum annuum) (GPL16195) SRA Capsicum annuum
Capsicum annuum
other seed/fruit/grain pepper_sRNA_Fruit3
13 GSM1047560 AC 5DAP 0 Plant Resarch International 2012-11-30 [HT Sequencing] Illumina HiSeq 2000 (Solanum lycopersicum) (GPL16345) SRA Solanum lycopersicum
Solanum lycopersicum
other seed/fruit/grain whole fruit
14 GSM1047561 AC MG 0 Plant Resarch International 2012-11-30 [HT Sequencing] Illumina HiSeq 2000 (Solanum lycopersicum) (GPL16345) SRA Solanum lycopersicum
Solanum lycopersicum
other seed/fruit/grain whole fruit
15 GSM1047562 AC Br 0 Plant Resarch International 2012-11-30 [HT Sequencing] Illumina HiSeq 2000 (Solanum lycopersicum) (GPL16345) SRA Solanum lycopersicum
Solanum lycopersicum
other seed/fruit/grain whole fruit
16 GSM1047563 AC RR 0 Plant Resarch International 2012-11-30 [HT Sequencing] Illumina HiSeq 2000 (Solanum lycopersicum) (GPL16345) SRA Solanum lycopersicum
Solanum lycopersicum
other seed/fruit/grain whole fruit
17 GSM1053997 Control: Seed from ColA9 X Col-0 rep1 0 UC Davis 2012-12-17 [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) SRA Arabidopsis thaliana
Arabidopsis thaliana
other seed/fruit/grain Control: Seed from ColA9 X Col-0 rep1
18 GSM1053998 Control: Seed from ColA9 X Col-0 rep2 0 UC Davis 2012-12-17 [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) SRA Arabidopsis thaliana
Arabidopsis thaliana
other seed/fruit/grain Control: Seed from ColA9 X Col-0 rep2
19 GSM1053999 Control: Seed from C24A9 X C24 rep1 0 UC Davis 2012-12-17 [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) SRA Arabidopsis thaliana
Arabidopsis thaliana
other seed/fruit/grain Control: Seed from C24A9 X C24 rep1
20 GSM1054000 Control: Seed from C24A9 X C24 rep2 0 UC Davis 2012-12-17 [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) SRA Arabidopsis thaliana
Arabidopsis thaliana
other seed/fruit/grain Control: Seed from C24A9 X C24 rep2
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