Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Plants
(91,454)

Bacteria
(39,082)

Viruses
(1,266)

SAGE RsaI
(0)

SAGE Sau3A
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(4,443)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(24)

adult aerial structure
(737)

young aerial structure
(436)

root
(188)

meristem/growing tissue
(137)

flower/sexual organ
(407)

seed/fruit/grain
(153)

pooled
(253)

unclassified
(2,042)

all
(4,443)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM1056094	R08_4DAF_BR1	0	University of Illinois	2012-12-20	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	other seed/fruit/grain	whole seed
2	GSM1056096	R09_12-14DAF_BR1	0	University of Illinois	2012-12-20	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	other seed/fruit/grain	whole seed
3	GSM1056100	R11_5-6mgWS_BR1	0	University of Illinois	2012-12-20	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	other seed/fruit/grain	whole seed
4	GSM1056106	R14_DrySeed_BR1	0	University of Illinois	2012-12-20	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	other seed/fruit/grain	whole seed
5	GSM365164	Colgl_embryo_meDIP-seq	0	Fred Hutchinson Cancer Research Center	2009-01-28	[HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062)	SRA	Arabidopsis thaliana	embryo	embryo
6	GSM365167	Ler_embryo_meDIP-seq	0	Fred Hutchinson Cancer Research Center	2009-01-28	[HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062)	SRA	Arabidopsis thaliana	embryo	embryo
7	GSM385393	ColxCol_5d_silique	0	Cambridge University	2009-03-23	[HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062)	SRA	Arabidopsis thaliana	other seed/fruit/grain	5d post-fertilization siliques ColxCol
8	GSM385394	ColxLer_5d_silique	0	Cambridge University	2009-03-23	[HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062)	SRA	Arabidopsis thaliana	other seed/fruit/grain	5d post-fertilization siliques ColxLer
9	GSM385395	LerxLer_5d_silique	0	Cambridge University	2009-03-23	[HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062)	SRA	Arabidopsis thaliana	other seed/fruit/grain	5d post-fertilization siliques LerxLer
10	GSM385396	LerxCol_5d_silique	0	Cambridge University	2009-03-23	[HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062)	SRA	Arabidopsis thaliana	other seed/fruit/grain	5d post-fertilization siliques LerxCol
11	GSM399597	Embryo_BS_seq	0	University of California at Berkeley	2009-05-01	[HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302)	SRA	Arabidopsis thaliana	embryo	Embryo
12	GSM528201	Wild type soybean seed	0	USDA/ARS	2010-03-29	[HT Sequencing] Illumina Genome Analyzer (Glycine max) (GPL10267)	SRA	Glycine max	other seed/fruit/grain	Seed
13	GSM528202	SP- soybean seed	0	USDA/ARS	2010-03-29	[HT Sequencing] Illumina Genome Analyzer (Glycine max) (GPL10267)	SRA	Glycine max	other seed/fruit/grain	Seed
14	GSM560562	Embryo_BS-Seq	0	University of California at Berkeley	2010-06-27	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	embryo	Embryo
15	GSM560563	Endosperm_BS-Seq	0	University of California at Berkeley	2010-06-27	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	other seed/fruit/grain	Endosperm
16	GSM607724	Col-LCMxLer-LCM_Embryo	0	University of California at Berkeley	2010-10-12	[HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302)	SRA	Arabidopsis thaliana	embryo	Embryo
17	GSM607726	Col-WTxLer-WT_Embryo	0	University of California at Berkeley	2010-10-12	[HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302)	SRA	Arabidopsis thaliana	embryo	Embryo
18	GSM607731	Ler-WTxCol-WT_Embryo	0	University of California at Berkeley	2010-10-12	[HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302)	SRA	Arabidopsis thaliana	embryo	Embryo
19	GSM621344	Small_RNA	0	IGDB	2010-11-10	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	other seed/fruit/grain	soybean seed
20	GSM629206	3 days-Germinating seed	0	University of Delaware	2010-11-24	[HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147)	SRA	Oryza sativa	other seed/fruit/grain	Seed

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