Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,728)		   Tiling Array
(707)		   cDNA Array
(1,590)		   Oligo Array
(1,695)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(818)		   Other
(18)		   All
(6,642)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 An expression atlas of rice mRNAs and small RNAs (GSE7107) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2007-02-22 Oryza sativa
Oryza sativa		 4,499,820
(249,990 x 18) 		6 1 5 1 3 1 1 by_platform
by_series
2 Genome-wide analysis for rice small RNAs by MPSS (GSE10523) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2008-02-14 Oryza sativa
Oryza sativa		 1,197,816
(299,454 x 4) 		3 1 by_platform
by_series
3 An expression atlas of rice mRNAs and small RNAs (GSE7107) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2007-02-22 Oryza sativa
Oryza sativa		 898,362
(299,454 x 3) 		1 1 1 by_platform
by_series
4 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (small RNA data) (GSE4912) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2006-05-24 Oryza sativa
Oryza sativa		 299,454
(299,454 x 1) 		1 by_platform
by_series
5 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (GSE4924) [MPSS] Rice small RNA MPSS signatures (GPL3776) University of Delaware 2006-05-25 Oryza sativa
Oryza sativa		 299,454
(299,454 x 1) 		1 by_platform
by_series
6 Genome-wide analysis for rice small RNAs by MPSS (GSE10523) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2008-02-14 Oryza sativa
Oryza sativa		 249,990
(249,990 x 1) 		1 by_platform
by_series
7 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (mRNA data) (GSE4920) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2006-05-24 Oryza sativa
Oryza sativa		 249,990
(249,990 x 1) 		1 by_platform
by_series
8 Genomic and genetic characterization of rice Cen3 reveals evolutionary remnants of a complex centromere (GSE4924) [MPSS] Rice mRNA MPSS signatures (GPL3777) University of Delaware 2006-05-25 Oryza sativa
Oryza sativa		 249,990
(249,990 x 1) 		1 by_platform
by_series
9 Small RNAs in rice seed (GSE11974) [MPSS] IPPE Rice MPSS (GPL7013) Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences 2008-07-02 Oryza sativa
Oryza sativa		 111,161
(111,161 x 1) 		1 by_platform
by_series
10 A Comparison of microarray and MPSS Technology Platforms for Expression Analysis of Arabidopsis (GSE8994) [MPSS] Arabidopsis mRNA MPSS signatures (GPL5800) University of Manchester 2007-09-10 Arabidopsis thaliana
Arabidopsis thaliana		 3,270,443
(297,313 x 11) 		3 1 6 1 by_platform
by_series
11 Arabidopsis thaliana tetraploid transcriptome (GSE18482) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) Technische Universität München, WZW 2009-10-08 Arabidopsis thaliana
Arabidopsis thaliana		 2,170,560
(45,220 x 48) 		12 36 by_platform
by_series
12 Profiling of caf1a and caf1b mutants (GSE17022) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) UCSD 2009-07-08 Arabidopsis thaliana
Arabidopsis thaliana		 1,220,940
(45,220 x 27) 		27 by_platform
by_series
13 The protective role of silicon in the Arabidopsis-powdery mildew pathosystem (GSE5718) [MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871) Laval University 2006-09-01 Arabidopsis thaliana
Arabidopsis thaliana		 1,062,960
(44,290 x 24) 		24 by_platform
by_series
14 Root transcriptome remodeling of Arabidopsis in response to high levels of magnesium sulfate (GSE20109) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) University of Florida 2010-01-29 Arabidopsis thaliana
Arabidopsis thaliana		 904,400
(45,220 x 20) 		20 by_platform
by_series
15 Small RNA identification in Arabidopsis thaliana using modified MPSS (GSE3008) [MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675) University of Delaware 2005-07-26 Arabidopsis thaliana
Arabidopsis thaliana		 726,328
(181,582 x 4) 		2 2 by_platform
by_series
16 Dynamics of membrane potential variation and gene expression induced by Spodoptera littoralis, Myzus persicae, and Pseudomonas syringae in Arabidopsis (GSE40926) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) University of Turin 2012-09-17 Arabidopsis thaliana
Arabidopsis thaliana		 542,640
(45,220 x 12) 		12 by_platform
by_series
17 Functional analysis of HSFB transcription factors [22°C] (GSE14702) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) National Institute of Advanced Industrial Science and Technology 2009-02-04 Arabidopsis thaliana
Arabidopsis thaliana		 452,200
(45,220 x 10) 		4 6 by_platform
by_series
18 Functional analysis of Arabidopsis HSFB transcription factor (GSE31888) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) National Institute of Advanced Industrial Science and Technology 2011-09-06 Arabidopsis thaliana
Arabidopsis thaliana		 452,200
(45,220 x 10) 		4 6 by_platform
by_series
19 Comparison of Arabidopsis callus (GSE21631) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299) National Institute of Advanced Industrial Science and Technology 2010-05-03 Arabidopsis thaliana
Arabidopsis thaliana		 450,636
(37,553 x 12) 		3 9 by_platform
by_series
20 Comparison of SND2-overexpressing and wild type Arabidopsis thaliana Col-0 inflorescence stems (GSE29693) [MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177) University of Pretoria 2011-06-02 Arabidopsis thaliana
Arabidopsis thaliana		 361,760
(45,220 x 8) 		8 by_platform
by_series
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