Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Plants
(93,301)

Bacteria
(39,613)

Viruses
(1,263)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(298)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(4,835)

Other
(117)

All
(93,301)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(49)

young aerial structure
(85)

root
(32)

meristem/growing tissue
(26)

flower/sexual organ
(9)

seed/fruit/grain
(3)

pooled
(3)

unclassified
(91)

all
(298)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM1005117	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
2	GSM1005118	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
3	GSM1005119	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
4	GSM1005120	Wild type Magnesium chloride infiltrated vs Pseudomonas syringae infected. Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves Magnesium chloride infiltrated WT rosette leaves Pseudomonas syringae infected
5	GSM1005121	Wild type mechanical damage vs herbivore wounding Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
6	GSM1005122	Wild type mechanical damage vs herbivore wounding Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
7	GSM1005123	Wild type mechanical damage vs herbivore wounding Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
8	GSM1005124	Wild type mechanical damage vs herbivore wounding Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves herbivore wounded
9	GSM1005125	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 1	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
10	GSM1005126	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 2	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
11	GSM1005127	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 3	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
12	GSM1005128	Wild type mechanical damaged vs Myzus persicae feeding. Replicate 4	39,102	University of Turin	2012-09-17	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) (GPL6177)	RNA	Arabidopsis thaliana	leaf	WT rosette leaves mechanical damaged WT rosette leaves aphid wounded
13	GSM1059954	SACMV-[ZA:99]-infected vs control_14 dpi	37,478	University of the Witswatersrand	2013-01-04	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	leaf	[infection] Apical leaf tissue [control] Apical leaf tissue
14	GSM1059955	SACMV-[ZA:99]-infected vs control_24 dpi	37,478	University of the Witswatersrand	2013-01-04	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	leaf	[infection] Apical leaf tissue [control] Apical leaf tissue
15	GSM1059956	SACMV-[ZA:99]-infected vs control_36 dpi	37,478	University of the Witswatersrand	2013-01-04	[MPSS] Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Probe Name version) (GPL7299)	RNA	Arabidopsis thaliana	leaf	[infection] Apical leaf tissue [control] Apical leaf tissue
16	GSM109198	Small RNA MPSS signatures located in the region of the chromosome 3 centromere.	7,062	University of Delaware	2006-05-17	[MPSS] Rice small RNA MPSS signatures (GPL3776)	MPSS	Oryza sativa	pooled	Immature panicle and seedlings
17	GSM109200	Poly(A)+ MPSS signatures located at in the region of the chromosome 3 centromere	504	University of Delaware	2006-05-17	[MPSS] Rice mRNA MPSS signatures (GPL3777)	MPSS	Oryza sativa	pooled	MPSS data were obtained from the following samples: young leaves, young roots, young leaves - cold stressed, young roots - cold stressed, young leaves - drought stressed, young roots - drought stressed, young leaves - salt stressed, young roots - salt stressed, mature leaves, mature roots, 10 day old seedlings (dark grown), 3 day old seedlings, immature panicle, meristematic tissue, ovary & mature stigma, pollen, callus.
18	GSM120717	rdr2, mixed stage inflorescence small RNA MPSS set	15,325	University of Delaware	2006-07-17	[MPSS] Small RNA identification in Arabidopsis thaliana using modified MPSS (GPL2675)	MPSS	Arabidopsis thaliana	other flower/sexual organ	Inflorescence tissue
19	GSM132997	Control_vs_Pathogen_replicate_1	39,941	Laval University	2006-08-31	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	unclassified	source_name:Control Arabidopsis Diseased Arabidopsis title:Control_vs_Pathogen_replicate_1 description:Supplementary file contain raw data obained after scan.
20	GSM133000	Control_vs_Pathogen_replicate_2	39,941	Laval University	2006-08-31	[MPSS] Agilent-012600 Arabidopsis 3 Oligo Microarray (4142A (Feature Number version) (GPL2871)	RNA	Arabidopsis thaliana	unclassified	source_name:Control Arabidopsis Diseased Arabidopsis title:Control_vs_Pathogen_replicate_2 description:Supplementary file contains raw data obained after scan.

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