Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,438)		   Primates
(205)		   Rodents
(12,530)		   Mammals
(774)		   Vertebrates
(1,152)		   Invertebrates
(3,917)		   Plants
(6,619)		   Bacteria
(2,962)		   Viruses
(50)		   Phages
(4)		   Unclassified
(282)		   All
(46,983)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,725)		   Tiling Array
(706)		   cDNA Array
(1,589)		   Oligo Array
(1,691)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(804)		   Other
(18)		   All
(6,619)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Soybean fast neutron genotyping: 700k Forward genetics (GSE31038) [Oligo Array] NimbleGen Soybean 700K CGH array (design 091113_Gmax_RS_CGH_HX3) (GPL11198) University of Minnesota 2011-07-29 Glycine max
Glycine max		 79,359,846
(696,139 x 114) 		22 1 1 9 1 80 by_platform
by_series
2 EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development (GSE34689) [Oligo Array] NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1] (GPL15056) University of California at Berkeley 2011-12-23 Arabidopsis thaliana
Arabidopsis thaliana		 49,698,423
(2,160,801 x 23) 		23 by_platform
by_series
3 Distribution, functional impact and origin mechanisms of copy number variation in the barley genome (GSE44293) [Oligo Array] 101206_Barley_NS_CGH_HX1 (GPL16680) University of Minnesota 2013-02-13 Hordeum vulgare subsp. vulgare
Hordeum vulgare subsp. vulgare		 40,217,110
(2,116,690 x 19) 		1 18 by_platform
by_series
4 Increase in chromatin accessibility to MNase at sites of DNA replication (GSE43548) [Oligo Array] NimbleGen Saccharomyces cerevisiae 2007-09-04_SGD1_TT_ChIP (GPL10725) Fred Hutchinson Cancer Research Center 2013-01-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 36,960,192
(385,002 x 96) 		96 by_platform
by_series
5 INTACT method for gene expression and chromatin profiling of individual cell types within a tissue (GSE19654) [Oligo Array] Nimblegen_HD2_Arabidopsis (GPL7143) Fred Hutchinson Cancer Research Center 2009-12-24 Arabidopsis thaliana
Arabidopsis thaliana		 32,026,960
(2,001,685 x 16) 		12 4 by_platform
by_series
6 ArrayCGH of Trichoderma reesei strains QM9123, QM9414, NG14 and RutC-30 (GSE19606) [Oligo Array] NimbleGen T. reesei 2.1M HD2 arrayCGH (GPL9821) VTT Technical Research Centre 2009-12-22 Hypocrea jecorina
Hypocrea jecorina		 30,294,572
(2,163,898 x 14) 		14 by_platform
by_series
7 Genome-wide expression quantitative trait loci (eQTL) analysis in maize (GSE29964) [Oligo Array] Maize Pioneer Hi-Bred 105K mRNA Microarray (GPL10837) Pioneer Hi-Bred International 2011-06-14 Zea mays
Zea mays		 26,057,856
(105,072 x 248) 		248 by_platform
by_series
8 The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program (GSE36128) [Oligo Array] NimbleGen 090918 Vitus vinifera exp HX12 (GPL13936) University of Verona 2012-02-28 Vitis vinifera
Vitis vinifera		 22,576,806
(139,363 x 162) 		9 3 3 12 21 87 18 9 by_platform
by_series
9 Maize Comparative Genomic Hybridization (CGH) between B73, Mo17, M0022 (RIL), and M0023 (RIL) (GSE16938) [Oligo Array] NimbleGen Zea Mays 2.1M array (GPL8790) Iowa State University 2009-07-02 Zea mays
Zea mays		 19,116,261
(2,124,029 x 9) 		9 by_platform
by_series
10 Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies (GSE27052) [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) University of Western Australia 2011-02-03 Brassica rapa
Brassica rapa		 17,862,240
(105,072 x 170) 		170 by_platform
by_series
11 Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27 (GSE39456) [Oligo Array] NimbleGen 3x1.4M Maize Methylation Array (GPL15621) University of Minnesota 2012-07-18 Zea mays
Zea mays		 16,811,856
(1,400,988 x 12) 		2 2 8 by_platform
by_series
12 A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies (GSE13161) [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) Yale University 2008-10-10 Oryza sativa
Oryza sativa		 13,359,940
(60,727 x 220) 		4 4 32 180 by_platform
by_series
13 Chromosome copy number variation in Cryptococcus neoformans influences virulence and occurs in isolates from AIDS patients (GSE29675) [Oligo Array] NimbleGen Cryptococcus H99 Whole Genome CGH array (12x135K) (GPL13662) The University of British Columbia 2011-06-01 Cryptococcus neoformans
Cryptococcus neoformans		 12,955,488
(134,953 x 96) 		96 by_platform
by_series
14 Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm (GSE33730) [Oligo Array] NimbleGen 2.1M Maize Methylation Array (GPL13499) University of Minnesota 2011-11-16 Zea mays
Zea mays		 12,724,206
(2,120,701 x 6) 		6 by_platform
by_series
15 Variation in DNA methylation patterns more common among maize inbreds than among tissues (GSE38503) [Oligo Array] NimbleGen 2.1M Maize Methylation Array (GPL13499) University of Minnesota 2012-06-05 Zea mays
Zea mays		 12,724,206
(2,120,701 x 6) 		2 4 by_platform
by_series
16 Rice japonica gene expression array across eleven tissues (GSE6921) [Oligo Array] Rice japonica 400K NimbleGen Oligo Array (GPL4794) Yale University 2007-01-30 Oryza sativa
Oryza sativa		 12,583,692
(381,324 x 33) 		33 by_platform
by_series
17 Gene expression in leaves of a Populus trichocarpa and Populus deltoides pseudo-backcross population (GSE20117) [Oligo Array] UF Nimblegen Populus trichocarpa Array (GPL7234) University of Florida 2010-01-30 Populus trichocarpa x Populus deltoides
Populus trichocarpa x Populus deltoides		 12,425,151
(67,897 x 183) 		183 by_platform
by_series
18 Genome-wide analysis of H3K9me2 in ibm1, kyp, and cmt3 mutants of Arabidopsis thaliana (GSE22953) [Oligo Array] NimbleGen 2.1M HD2 Arabidopsis HD2 Custom Array (GPL10686) Nara Institute of Science and Technology 2010-07-15 Arabidopsis thaliana
Arabidopsis thaliana		 12,322,062
(2,053,677 x 6) 		6 by_platform
by_series
19 Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome (GSE23030) [Oligo Array] NimbleGen 2.1M HD2 Arabidopsis HD2 Custom Array (GPL10686) Nara Institute of Science and Technology 2010-07-20 Arabidopsis thaliana
Arabidopsis thaliana		 12,322,062
(2,053,677 x 6) 		6 by_platform
by_series
20 Gene expression and intragenic polymorphism in a Populus trichocarpa and Populus deltoides pseudo-backcross pedigree (GSE12623) [Oligo Array] UF Nimblegen Populus trichocarpa Array (GPL7234) University of Florida 2008-08-29 Populus trichocarpa x Populus deltoides
Populus trichocarpa x Populus deltoides		 12,085,666
(67,897 x 178) 		178 by_platform
by_series
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