Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,712)		   Tiling Array
(694)		   cDNA Array
(1,562)		   Oligo Array
(1,630)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(777)		   Other
(18)		   All
(6,479)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Remodeling of global transcription patterns of C. neoformans genes mediated by stress-activated HOG signaling pathways (GSE16692) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2009-06-17 Cryptococcus neoformans var. grubii
Cryptococcus neoformans var. grubii		 844,800
(8,448 x 100) 		100 by_platform
by_series
2 Flucytosine-responsive APSES proteins, Msa1 and Mbs1, play pleiotropic roles in stress response, differentiation, and virulence of Cryptococcus neoformans (GSE30158) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2011-06-22 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 253,440
(8,448 x 30) 		30 by_platform
by_series
3 Toc1, Toc2, and Skn7 null mutants treated with Flucytosine (GSE30154) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2011-06-22 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 202,752
(8,448 x 24) 		24 by_platform
by_series
4 Molecular and Functional Characterization of the role of RNA silencing components in Cryptococcus neoformans (GSE21178) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2010-04-02 Cryptococcus neoformans var. neoformans JEC21
Cryptococcus neoformans var. neoformans JEC21		 185,856
(8,448 x 22) 		22 by_platform
by_series
5 The role of the Ras- and cAMP-signaling pathways in stress response and sterol biosynthesis in Cryptococcus neoformans (GSE17338) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2009-07-27 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 152,064
(8,448 x 18) 		18 by_platform
by_series
6 Comparative transcriptome analysis of the CO2 sensing pathway via differential expressions of carbonic anhydrase in Cryptococcus neoformans (GSE21192) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2010-04-04 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 143,616
(8,448 x 17) 		17 by_platform
by_series
7 Molecular and Functional Characterization of the role of RNA silencing components in Cryptococcus neoformans [RNAi_Serotype A] (GSE21176) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2010-04-02 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 135,168
(8,448 x 16) 		16 by_platform
by_series
8 Global transcriptome analysis of eukaryotic genes affected by Gromwell extract (GSE43370) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2013-01-09 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 101,376
(8,448 x 12) 		12 by_platform
by_series
9 A flucytosine-responsive APSES protein, Mbs1, plays pleiotropic roles in stress response, differentiation, and virulence of Cryptococcus neoformans (GSE30156) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2011-06-22 Cryptococcus neoformans var. grubii H99
Cryptococcus neoformans var. grubii H99		 76,032
(8,448 x 9) 		9 by_platform
by_series
10 Molecular and Functional Characterization of the role of RNA silencing components in Cryptococcus neoformans [RNAi_Serotype D] (GSE21177) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2010-04-02 Cryptococcus neoformans var. neoformans JEC21
Cryptococcus neoformans var. neoformans JEC21		 50,688
(8,448 x 6) 		6 by_platform
by_series
11 Pleiotropic roles of Msi1-like protein, Msl1, in growth, differentiation, stress response, and virulence of Cryptococcus neoformans (GSE40303) [Oligo Array] Duke Cryptococcus neoformans serotype D (JEC21) 8K (GPL8638) Yonsei University 2012-08-22 Cryptococcus neoformans var. grubii H99,Cryptococcus neoformans var. grubii
Cryptococcus neoformans var. grubii H99,Cryptococcus neoformans var. grubii		 50,688
(8,448 x 6) 		6 by_platform
by_series
12 Expression profiles of barley chromosome addition lines of common wheat (GSE28023) [Oligo Array] Agilent-015520 Custom wheat 38k array (GPL9805) Yokohama City University 2011-03-17 Triticum aestivum
Triticum aestivum		 941,832
(39,243 x 24) 		24 by_platform
by_series
13 A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies (GSE13161) [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) Yale University 2008-10-10 Oryza sativa
Oryza sativa		 13,359,940
(60,727 x 220) 		4 4 32 180 by_platform
by_series
14 Rice japonica gene expression array across eleven tissues (GSE6921) [Oligo Array] Rice japonica 400K NimbleGen Oligo Array (GPL4794) Yale University 2007-01-30 Oryza sativa
Oryza sativa		 12,583,692
(381,324 x 33) 		33 by_platform
by_series
15 Global mapping of epigenetic modifications of histone H3 Lysine 4 di- and trimethylation in Rice (GSE9925) [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 (GPL6286) Yale University 2007-12-17 Oryza sativa
Oryza sativa		 9,329,616
(388,734 x 24) 		12 12 by_platform
by_series
16 Development of a versatile, target-oriented tiling microarray assay for measuring allele-specific gene expression (GSE20678) [Oligo Array] Yale University Rice SNP Array 386K (GPL10148) Yale University 2010-03-08 Oryza sativa
Oryza sativa		 4,641,708
(386,809 x 12) 		12 by_platform
by_series
17 Global mapping of epigenetic modifications of histone H3 Lysine 4 di- and trimethylation in Rice (GSE9925) [Oligo Array] Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1 (GPL6285) Yale University 2007-12-17 Oryza sativa
Oryza sativa		 3,115,032
(389,379 x 8) 		4 4 by_platform
by_series
18 Transcriptional Analysis of 1M Regions in Medicago truncatula Using Tiling Microarrays (GSE10055) [Oligo Array] Yale University MCDB Medicago truncatula NimbleGen 390K Oligo Array (GPL6335) Yale University 2008-01-02 Medicago truncatula
Medicago truncatula		 2,283,420
(380,570 x 6) 		2 2 1 1 by_platform
by_series
19 Transcriptional Analysis of Medicago truncatula and Glycine max Using Tiling Microarrays (GSE10151) [Oligo Array] Yale University MCDB Medicago truncatula NimbleGen 390K Oligo Array (GPL6335) Yale University 2008-01-11 Medicago truncatula
Medicago truncatula		 2,283,420
(380,570 x 6) 		2 2 1 1 by_platform
by_series
20 Transcriptional Analysis of 1M Regions in Glycine max Using Tiling Microarrays (GSE10056) [Oligo Array] Yale University MCDB Glycine max NimbleGen 390K Oligo Array (GPL6337) Yale University 2008-01-02 Glycine max
Glycine max		 2,200,788
(366,798 x 6) 		2 2 1 1 by_platform
by_series
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