Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(13,126)		   Primates
(31)		   Rodents
(3,325)		   Mammals
(2,359)		   Vertebrates
(648)		   Invertebrates
(575)		   Plants
(6,788)		   Bacteria
(568)		   Viruses
(6)		   Phages
(0)		   Unclassified
(25)		   All
(27,490)		  
  SAGE NlaIII
(2)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(858)		   Tiling Array
(595)		   cDNA Array
(4,266)		   Oligo Array
(1,008)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(59)		   Other
(0)		   All
(6,788)		  
  brain
(0)		   blood
(4)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(98)		   young aerial structure
(0)		   root
(75)		   meristem/growing tissue
(0)		   flower/sexual organ
(16)		   seed/fruit/grain
(0)		   pooled
(110)		   unclassified
(705)		   all
(1,008)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM170705 Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep1) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves mock-inoculated with water, 48 hours post-inoculation (control, T48) title:Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep1) description:Procedure for spot detection was performed by NimbleGen Company
2 GSM170711 Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep2) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves mock-inoculated with water, 48 hours post-inoculation (control, T48) title:Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep2) description:Procedure for spot detection was performed by NimbleGen Company
3 GSM170717 Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep3) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves mock-inoculated with water, 48 hours post-inoculation (control, T48) title:Beaupré leaves mock-inoculated with water (control, T48 Bpre_T48_Rep3) description:Procedure for spot detection was performed by NimbleGen Company
4 GSM170723 Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep1) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain, 48 hours post-inoculation (Incompatible, I48) title:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep1) description:Procedure for spot detection was performed by NimbleGen Company
5 GSM170729 Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep2) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain, 48 hours post-inoculation (Incompatible, I48) title:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep2) description:Procedure for spot detection was performed by NimbleGen Company
6 GSM170734 Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep3) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain, 48 hours post-inoculation (Incompatible, I48) title:Beaupré leaves inoculated with Melampsora larici-populina 93ID6 avirulent strain (Incompatible, I48 Bpre_I48_Rep3) description:Procedure for spot detection was performed by NimbleGen Company
7 GSM170739 Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep1) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain, 48 hours post-inoculation (Compatible, C48) title:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep1) description:Procedure for spot detection was performed by NimbleGen Company
8 GSM170744 Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep2) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain, 48 hours post-inoculation (Compatible, C48) title:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep2) description:Procedure for spot detection was performed by NimbleGen Company
9 GSM170749 Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep3) 388,340 INRA 2007-02-21 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa,Populus deltoides
Populus trichocarpa,Populus deltoides		 unclassified source_name:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain, 48 hours post-inoculation (Compatible, C48) title:Beaupré leaves inoculated with Melampsora larici-populina 98AG31 virulent strain (Compatible, C48 Bpre_C48_Rep3) description:Procedure for spot detection was performed by NimbleGen Company
10 GSM415421 3d Control 2 388,340 INRA 2009-06-10 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba		 root Control roots
11 GSM417830 3d Control 1 388,340 INRA 2009-06-17 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba		 root Control roots
12 GSM417831 3d Control 3 388,340 INRA 2009-06-17 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba		 root Populus tremula x alba INRA clone 717-1B4 Poplar control roots Control samples were covered with cellophane membranes
13 GSM417832 3d indirect contact 1 388,340 INRA 2009-06-17 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba		 root Roots in indirect contact with Laccaria bicolor
14 GSM417833 3d indirect contact 2 388,340 INRA 2009-06-17 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba		 root Roots in indirect contact with Laccaria bicolor
15 GSM417856 3d indirect contact 3 388,340 INRA 2009-06-17 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus tremula x Populus alba
Populus tremula x Populus alba		 root Roots in indirect contact with Laccaria bicolor
16 GSM648401 Ectomycorrhizal root tip P.trichocarpa 1 388,340 INRA 2011-01-04 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa
Populus trichocarpa		 pooled Ectomycorrhizal root tip P.trichocarpa 1
17 GSM648403 Ectomycorrhizal root tip P.trichocarpa 2 388,340 INRA 2011-01-04 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa
Populus trichocarpa		 pooled Ectomycorrhizal root tip P.trichocarpa 2
18 GSM648405 Ectomycorrhizal root tip P.trichocarpa 3 388,340 INRA 2011-01-04 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus trichocarpa
Populus trichocarpa		 pooled Ectomycorrhizal root tip P.trichocarpa 3
19 GSM648408 Ectomycorrhizal root tip P.deltoides 1 388,340 INRA 2011-01-04 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus deltoides
Populus deltoides		 pooled Ectomycorrhizal root tip P.deltoides 1
20 GSM648411 Ectomycorrhizal root tip P.deltoides 2 388,340 INRA 2011-01-04 [Oligo Array] Populus 2.0 (GPL2699) RNA Populus deltoides
Populus deltoides		 pooled Ectomycorrhizal root tip P.deltoides 2
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