| 1 |
GPL7071 |
Small RNA SBS signatures indentified from maize using Illumina's SBS technnology |
5,386,553 |
University of Delaware |
2008-07-19 |
|
Zea mays
 |
Other |
other, Small RNA SBS signatures indentified from maize using Illumina's SBS technnology, |
| 2 |
GPL5014 |
Sequenced small RNAs from the lycopod Selaginella moellendorffii |
36,582 |
Pennsylvania State University |
2007-03-20 |
|
Selaginella moellendorffii
 |
Other |
other, Sequenced small RNAs from the lycopod Selaginella moellendorffii, Pyrosequencing of small RNAs from the lycopod Selaginella moellendorffii. |
| 3 |
GPL10299 |
SAGE:16:DpnII:Schizophyllum commune |
0 |
|
2010-04-08 |
|
Schizophyllum commune
 |
Other |
other, SAGE:16:DpnII:Schizophyllum commune, This is a virtual platform for SAGE libraries generated for Schizophyllum commune using DpnII as an anchor enzyme. |
| 4 |
GPL973 |
UMAS:MboI/FokI:Saccharomyces cerevisiae |
32,097 |
Agilix Corporation |
2004-02-04 |
|
Saccharomyces cerevisiae
 |
Other |
other, UMAS:MboI/FokI:Saccharomyces cerevisiae, This is a virtual platform for UMAS libraries generated for Saccharomyces cerevisiae using MboI/FokI as an anchor enzyme. Platform_anchor: MboI/FokI |
| 5 |
GPL10695 |
SMD Print_1478 yeast protoarray YA104704 |
19,200 |
Stanford University |
2010-07-16 |
Stanford Functional Genomics Facility, Stanford School of Medicine |
Saccharomyces cerevisiae
|
Other |
spotted peptide or protein, SMD Print_1478 yeast protoarray YA104704, |
| 6 |
GPL7736 |
JHMI/Zhu_YEAST_14K_v1.0 |
13,632 |
Johns Hopkins |
2008-12-04 |
Zhu lab |
Saccharomyces cerevisiae
|
Other |
spotted peptide or protein, JHMI/Zhu_YEAST_14K_v1.0, |
| 7 |
GPL3234 |
Invitrogen Yeast Protoarray |
12,288 |
University of Washington |
2005-12-05 |
Invitrogen |
Saccharomyces cerevisiae
|
Other |
spotted peptide or protein, Invitrogen Yeast Protoarray, The Yeast ProtoArrayâ„¢ high-density functional protein microarray is the first microarray product that enables rapid elucidation of proteinprotein interactions on a proteome scale. The Yeast ProtoArrayâ„¢ contains 4,088 S. cerevisiae open reading frames (ORFs) expressed as 5'-GST fusions, purified and spotted in duplicate on a 1 inch x 3 inch nitrocellulose-coated slide (Figure 1).With the Yeast ProtoArrayâ„¢ PPI Kit, you can identify novel protein interactions in a single day, instead of the several weeks required using alternatives such as yeast two-hybrid systems. In addition, protein interactions can be easily assayed under different conditions to better understand interaction dynamics. |
| 8 |
GPL9404 |
Yeast Protoarray 082004_YeastProtoArrayKSP |
12,288 |
Duke University |
2009-10-08 |
Invitrogen |
Saccharomyces cerevisiae
|
Other |
spotted peptide or protein, Yeast Protoarray 082004_YeastProtoArrayKSP, |
| 9 |
GPL9445 |
Yeast Protoarray YA103104 gal file |
12,288 |
Duke University |
2009-10-14 |
Invitrogen |
Saccharomyces cerevisiae
|
Other |
spotted peptide or protein, Yeast Protoarray YA103104 gal file, |
| 10 |
GPL10696 |
SMD Print_1531 yeast protoarray YPROT2 |
11,520 |
Stanford University |
2010-07-16 |
Stanford Functional Genomics Facility, Stanford School of Medicine |
Saccharomyces cerevisiae
|
Other |
spotted peptide or protein, SMD Print_1531 yeast protoarray YPROT2, |
| 11 |
GPL14990 |
Pleiss Lab_S.cerevisiae_Q-PCR Screen Library |
5,760 |
Cornell University |
2011-12-09 |
Pleiss Lab |
Saccharomyces cerevisiae
|
Other |
other, Pleiss Lab_S.cerevisiae_Q-PCR Screen Library, |
| 12 |
GPL4992 |
Quantitative proteomics of anaerobic and aerobic yeast cultures |
892 |
Delft University of Technology |
2007-03-14 |
|
Saccharomyces cerevisiae
|
Other |
MS, Quantitative proteomics of anaerobic and aerobic yeast cultures, Proteins identified in quantitative analysis of anaerobic and aerobic yeast cultures |
| 13 |
GPL7795 |
SAGE:18:3' Long-SAGE modified:Saccharomyces cerevisiae |
0 |
|
2008-12-15 |
|
Saccharomyces cerevisiae
|
Other |
, SAGE:18:3' Long-SAGE modified:Saccharomyces cerevisiae, This is a virtual platform for SAGE libraries generated for Saccharomyces cerevisiae using 3' Long-SAGE modified as an anchor enzyme. |
| 14 |
GPL7796 |
SAGE:18:3'Long-SAGE modified:Saccharomyces cerevisiae |
0 |
|
2008-12-15 |
|
Saccharomyces cerevisiae
|
Other |
, SAGE:18:3'Long-SAGE modified:Saccharomyces cerevisiae, This is a virtual platform for SAGE libraries generated for Saccharomyces cerevisiae using 3'Long-SAGE modified as an anchor enzyme. |
| 15 |
GPL7798 |
SAGE:18:modified 3' Long-SAGE:Saccharomyces cerevisiae |
0 |
|
2008-12-15 |
|
Saccharomyces cerevisiae
|
Other |
, SAGE:18:modified 3' Long-SAGE:Saccharomyces cerevisiae, This is a virtual platform for SAGE libraries generated for Saccharomyces cerevisiae using modified 3' Long-SAGE as an anchor enzyme. |
| 16 |
GPL3886 |
Physcomitrella patens high-throughput small RNA sequencing |
214,996 |
Pennsylvania State University |
2006-06-19 |
|
Physcomitrella patens
 |
Other |
other, Physcomitrella patens high-throughput small RNA sequencing, Endogenous small RNAs from Physcomitrella patens were sequenced using pyrosequencing as described in Axtell et al. (2006) A two-hit trigger for siRNA biogenesis in plants. Cell 127: 565-577. UPDATED JULY 9, 2007 TO INCLUDE SEQUENCED RNAS THAT DO NOT HAVE AN EXACT MATCH IN THE GENOME |
| 17 |
GPL6919 |
Identification of targets of the protein disulfide reductase thioredoxin |
210 |
Technical University of Denmark |
2008-06-03 |
|
Hordeum vulgare
 |
Other |
MS, Identification of targets of the protein disulfide reductase thioredoxin, |
| 18 |
GPL7033 |
Proteins from vacuoles of Cyanidioschyzon merolae strain 10D |
46 |
Rikkyo (St. Paul's) University |
2008-07-08 |
|
Cyanidioschyzon merolae strain 10D
 |
Other |
MS, Proteins from vacuoles of Cyanidioschyzon merolae strain 10D, The vacuoles of Cyanidioschyzon merolae strain 10D (Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae) synchronized at interphase. The vacuoles of C. merolae synchronized at interphase were isolated by differential and iodixanol-gradient ultracentrifugation. The supernatant (5 ug of protein) were subjected to SDS-PAGE, cut into 69 slices without staining, and subjected to automatic sample preparation for MALDI-TOF-MS by a robot Xcise (Shimadzu). Alternatively, the vacuolar fraction protein (15.8 ug) was alkylated with 5% (w/v) acrylamide, subjected to SDS-PAGE, and stained with Imperial Protein Stain (Pierce). The gel slices of 58 visible bands were destained and digested as described previously (PMID: 11507753). After the digestion, the peptide fragments were extracted from the gel pieces with 5% (v/v) formic acid in 50% (v/v) CH3CN. Extracts were dried in a vacuum concentrator. The dried peptides were dissolved in 0.1% (v/v) trichloroacetic acid (TFA), desalted using uC18-Zip Tip microcolumns (Millipore) and spotted onto a 384-well plate (KRATOS Analytical). After completely drying the samples, 0.5% (w/v) alpha-cyano-4-hydroxycinnamic acid in 50% (v/v) CH3CN and 0.1% (v/v) TFA were spotted on the peptide spots and allowed to dry. The samples were analyzed by peptide mass fingerprinting (PMF) using a mass spectrometer (AXIMA-TOF2; Shimadzu) in the reflectron mode. When samples could not be identified by PMF, several peptide peaks were further analyzed by post source decay (PSD)-MS/MS. Database searches were performed using the software program MASCOT v2.2.01 (Matrix Science) running on a local database built from the FASTA files of 5014 open reading frames in the C. merolae genome database (http://merolae.biol.s.u-tokyo.ac.jp/). The peptide tolerance was set to 0.1-0.2 Da. Cysteine carbamidomethylation (for samples prepared by Xcise) or propionamidation (for manually prepared samples) was included as a fixed modification and methionine oxidation was included as a variable modification. The identification threshold was set to p < 0.05. As a result, 46 proteins were identified. |
| 19 |
GPL6705 |
Illumina Arabidopsis thaliana SBS inflorescence (polyA RNA) |
7,109,274 |
Delaware Biotechnology Institute |
2008-04-08 |
|
Arabidopsis thaliana
 |
Other |
other, Illumina Arabidopsis thaliana SBS inflorescence (polyA RNA), |
| 20 |
GPL6708 |
Illumina Arabidopsis thaliana SBS inflorescence (small RNA) |
3,589,785 |
Delaware Biotechnology Institute |
2008-04-08 |
|
Arabidopsis thaliana
|
Other |
other, Illumina Arabidopsis thaliana SBS inflorescence (small RNA), |