Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(88)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(298)		   GeneChip
(27,371)		   Tiling Array
(5,043)		   cDNA Array
(23,783)		   Oligo Array
(30,226)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(4,443)		   Other
(117)		   All
(91,454)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(2)		   seed/fruit/grain
(2)		   pooled
(4)		   unclassified
(109)		   all
(117)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM531766 Stage_II_Primordia 354,282 Utrecht University 2010-04-08 [Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299) SAGE Schizophyllum commune
Schizophyllum commune		 unclassified source_name:Stage II Primordia title:Stage_II_Primordia description:Anchoring enzyme: DpnII
2 GSM531764 Monokaryon_vegetative_mycelium 318,644 Utrecht University 2010-04-08 [Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299) SAGE Schizophyllum commune
Schizophyllum commune		 pooled Monokaryon, vegetative mycelium
3 GSM531765 Stage_I_Aggregates 293,178 Utrecht University 2010-04-08 [Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299) SAGE Schizophyllum commune
Schizophyllum commune		 unclassified source_name:Stage I Aggregates title:Stage_I_Aggregates description:Anchoring enzyme: DpnII
4 GSM531767 Mature mushrooms 267,911 Utrecht University 2010-04-08 [Other] SAGE:16:DpnII:Schizophyllum commune (GPL10299) SAGE Schizophyllum commune
Schizophyllum commune		 unclassified source_name:Mushrooms title:Mature mushrooms description:Anchoring enzyme: DpnII
5 GSM115095 Protonemata_1 214,996 Pennsylvania State University 2006-06-19 [Other] Physcomitrella patens high-throughput small RNA sequencing (GPL3886) RNA Physcomitrella patens
Physcomitrella patens		 pooled 7 day protonemata
6 GSM115096 Protonemata-YoungGametophores_1 214,996 Pennsylvania State University 2006-06-19 [Other] Physcomitrella patens high-throughput small RNA sequencing (GPL3886) RNA Physcomitrella patens
Physcomitrella patens		 pooled Protonemata-YoungGametophores_1
7 GSM115097 GamteophoresSporophytes_1 214,996 Pennsylvania State University 2006-06-19 [Other] Physcomitrella patens high-throughput small RNA sequencing (GPL3886) RNA Physcomitrella patens
Physcomitrella patens		 pooled ~60 day Gametophores and Sporophytes
8 GSM567208 ASH1-Cy3 labeled (2) 19,200 Stanford University 2010-07-16 [Other] SMD Print_1478 yeast protoarray YA104704 (GPL10695) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:ASH1 IVT mRNA Total mRNA title:ASH1-Cy3 labeled (2) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2008-02/78601.gif
9 GSM567234 ASH1-Cy5 labeled (2) 19,200 Stanford University 2010-07-16 [Other] SMD Print_1478 yeast protoarray YA104704 (GPL10695) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Total mRNA ASH1 IVT mRNA title:ASH1-Cy5 labeled (2) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2008-02/78600.gif
10 GSM567270 ASH1-Cy3 labeled (1) 19,200 Stanford University 2010-07-16 [Other] SMD Print_1478 yeast protoarray YA104704 (GPL10695) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:IVT ASH1 mRNA Total mRNA title:ASH1-Cy3 labeled (1) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2008-02/78731.gif
11 GSM567275 ASH1-Cy5 labeled (1) 19,200 Stanford University 2010-07-16 [Other] SMD Print_1478 yeast protoarray YA104704 (GPL10695) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Total mRNA ASH1 IVT mRNA title:ASH1-Cy5 labeled (1) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2008-02/78602.gif
12 GSM567216 HAC1 complete in Cy3(2) 11,520 Stanford University 2010-07-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HAC1 mRNA Total mRNA title:HAC1 complete in Cy3(2) description:Simple annotation: mRNA vs Total RNA Comparison, Controls Image: http://smd.stanford.edu/MicroArray/gifs/2009-01/82620.gif
13 GSM567241 HAC1 3'UTR mRNA(3) 11,520 Stanford University 2010-07-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HAC1 3'UTR mRNA Total mRNA title:HAC1 3'UTR mRNA(3) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2009-01/82619.gif
14 GSM567247 HAC1 3'UTR mRNA(4) 11,520 Stanford University 2010-07-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HAC1 3'UTR mRNA Total mRNA title:HAC1 3'UTR mRNA(4) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2009-01/82621.gif
15 GSM834074 HAC1 complete sequence in Cy5 (3) 11,520 Stanford University 2011-11-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Total mRNA HAC1 complete sequence mRNA title:HAC1 complete sequence in Cy5 (3) description:Simple annotation: mRNA vs Total RNA Comparison, Controls Image: http://smd.stanford.edu/MicroArray/gifs/2008-10/81625.gif is_reverse: no
16 GSM834075 HAC1 complete in Cy3 (3) 11,520 Stanford University 2011-11-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HAC1 mRNA Total mRNA title:HAC1 complete in Cy3 (3) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2009-01/82622.gif is_reverse: yes
17 GSM834076 HAC1 complete in Cy3 11,520 Stanford University 2011-11-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HAC1 mRNA Total mRNA title:HAC1 complete in Cy3 description:Simple annotation: mRNA vs Total RNA Comparison, Controls Image: http://smd.stanford.edu/MicroArray/gifs/2008-10/81628.gif is_reverse: yes
18 GSM834077 HAC1complete sequence in Cy5 (2) 11,520 Stanford University 2011-11-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Total yeast mRNA HAC1 mRNA (complete sequence) title:HAC1complete sequence in Cy5 (2) description:Simple annotation: mRNA vs Total RNA Comparison, Control experiment Image: http://smd.stanford.edu/MicroArray/gifs/2008-08/81026.gif is_reverse: no
19 GSM834078 HAC1 complete in Cy3(2) 11,520 Stanford University 2011-11-16 [Other] SMD Print_1531 yeast protoarray YPROT2 (GPL10696) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HAC1 mRNA Total mRNA title:HAC1 complete in Cy3(2) description:Simple annotation: mRNA vs Total RNA Comparison, Controls Image: http://smd.stanford.edu/MicroArray/gifs/2009-01/82620.gif is_reverse: yes
20 GSM15683 Galactose response of Saccharomyces cerevisiae 10,505 Agilix Corporation 2004-01-23 [Other] UMAS:MboI/FokI:Saccharomyces cerevisiae (GPL973) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:S. cerevisiae XS1385-8A grown in glucose media<->S. cerevisiae XS1385-8A grown in galactose media title:Galactose response of Saccharomyces cerevisiae description:Analysis of expression changes in Saccharomyces cerevisiae strain XS1385-8 in response to galactose induction using Universal Microarray System. For complete protocol details, see Roth et al. Nature Biotechnology (2004). Keywords = Saccharomyces cerevisiae, galactose, glucose, umas, GenCompass
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