Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(92)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(366)
  GeneChip
(31,260)
  Tiling Array
(5,692)
  cDNA Array
(24,724)
  Oligo Array
(35,607)
  Bead Array
(2,290)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(7,427)
  Other
(120)
  All
(107,706)
 
  brain
(0)
  blood
(1)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(23)
  young aerial structure
(1)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(21)
  unclassified
(25)
  all
(92)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM298187 0 Hours Resistant 2,738,110 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf mock inoculated leaves
2 GSM298189 12 Hours Resistant 1,607,776 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 12 hpi leaves
3 GSM298188 0 Hours Susceptible 1,355,986 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf mock inoculated leaves
4 GSM298192 72 Hours Susceptible 1,244,455 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 72 hpi leaves
5 GSM298191 72 Hours Resistant 1,158,776 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 72 hpi leaves
6 GSM298190 12 Hours Susceptible 1,099,531 Universidad de los Andes 2008-06-13 [SAGE NlaIII] SAGE:17:NlaIII:Solanum phureja (GPL6957) SAGE Solanum phureja
Solanum phureja
leaf 12 hpi leaves
7 GSM414746 tag of rice booting panicle 793,637 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE Oryza sativa
Oryza sativa
other flower/sexual organ tag of rice booting panicle
8 GSM414747 tag of rice callus 717,904 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE Oryza sativa
Oryza sativa
callus callus of rice
9 GSM696473 Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation 522,888 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
unclassified source_name:Phosphorus limited T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_phosphorus_limitation
10 GSM696988 Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions 469,509 Woods Hole Oceanographic Institution 2011-03-23 [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) SAGE Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
unclassified source_name:Nutrient replete T. pseudonana CCMP1335 culture title:Thalassiosira_pseudonana_CCMP1335_under_nutrient_replete_conditions
11 GSM874209 G11 87,510 浙江大学生物所 2012-02-12 [SAGE NlaIII] SAGE:17:NlaIII:Magnaporthe grisea (GPL15220) SAGE Magnaporthe grisea
Magnaporthe grisea
unclassified source_name:Guy11-Tag_counts title:G11
12 GSM874210 T146 82,297 浙江大学生物所 2012-02-12 [SAGE NlaIII] SAGE:17:NlaIII:Magnaporthe grisea (GPL15220) SAGE Magnaporthe grisea
Magnaporthe grisea
unclassified source_name:T146- Tag_counts title:T146
13 GSM34285 OSJNGg 57,668 University of Arizona 2004-11-01 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (japonica cultivar-group) (GPL775) SAGE Oryza sativa Japonica Group
Oryza sativa Japonica Group
leaf 21 days leaf of Oryza sativa subsp. japonica cultivar Nipponbare
14 GSM127012 RL-SAGE_MGGW_Vegetative mycelium_Gowda et al., 2004 51,925 The Ohio State University 2006-08-11 [SAGE NlaIII] SAGE:21:NlaIII:Magnaporthe grisea (GPL4085) SAGE Magnaporthe grisea
Magnaporthe grisea
pooled RL-SAGE_MGGW_Vegetative mycelium_Gowda et al., 2004
15 GSM34286 MG_SGa 51,925 University of Arizona 2004-11-01 [SAGE NlaIII] SAGE:17:NlaIII:Magnaporthe grisea 70-15 (GPL1676) SAGE Magnaporthe oryzae 70-15
Magnaporthe oryzae 70-15
pooled 3 days old mycelia from Magnaporthe grisea (strain 70-15)
16 GSM30936 Leaf Transcriptome of Zea mays Using RL-SAGE Method 44,870 Ohio State University 2004-09-21 [SAGE NlaIII] SAGE:17:NlaIII:Zea mays (GPL1462) SAGE Zea mays
Zea mays
leaf 30-day-old leaves
17 GSM308558 Super-SAGE Data from ppi2-1 mutant leaves (Wassilewskija) 43,580 University of Miyazaki 2008-07-30 [SAGE NlaIII] SAGE:22:NlaIII:Arabidopsis thaliana (GPL7109) SAGE Arabidopsis thaliana
Arabidopsis thaliana
leaf ppi2-1 mutant (Wassilewskija) leaves
18 GSM322154 Triticum aestivum cv Scorpion 25 Normal rep 1 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
19 GSM322155 Triticum aestivum cv Scorpion 25 Normal rep 2 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
20 GSM322156 Triticum aestivum cv Scorpion 25 Hot/Dry 39,040 University of Bristol 2008-09-18 [SAGE NlaIII] SAGE:15:NlaIII:Triticum aestivum (GPL7079) SAGE Triticum aestivum
Triticum aestivum
other adult aerial structure Libraries were produced for wheat varieties Xi19 and Scorpion 25 each grown under both normal and hot/dry conditions. Full details in: Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell and Keith J Edwards. Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription BMC Genomics Accepted.
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